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BaseInfo

ncRNA ID	novel_zma_miR7760
Species	Zea mays
Class	miRNA
Genome position	Chr4:170033314-170033418 [-]
Reference genome	RefGen_v4
Source	SRR3341905
Length	24
Mature sequence(if miRNA)	1 - AUUCAUAUGGAUUGGGGUAGAACC - 24
Stem-loop(if miRNA)	---UUAU UU         C      GA    A  GAU  GGA    GA   AA        U  CAAUCCAUA GGAUUG  GGGG UU   AC   UUAG  GAG  U        |  ||||||||| ||||||  |||| ||   ||   ||||  |||  U        G  GUUAGGUAU CUUAAC  CCCC AA   UG   GAUC  UUC  U CCAAGAU GG         A      UC    A  AUU  --G    -A   AG
Stem-loop sequence	UUAUUUUCAAUCCAUACGGAUUGGAGGGGAUUGAUACGGAUUAGGAGAGAAUUUGACUUACUAGGGUUUAAAACCCCCUCAAUUCAUAUGGAUUGGGGUAGAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055069.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:896   GGUUCUACCCCAAUCCAUAUGGAU   919 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672210.2	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:1682   GGUUCUACCCCAAUCCAUAUGGAU   1705 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:1909   GGUUCUACCCCAAUCCAUAUGGAU   1932 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:1909   GGUUCUACCCCAAUCCAUAUGGAU   1932 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_008672211.2	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:890   GGUUCUACCCCAAUCCAUAUGGAU   913 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:864   GGUUCUACCCCAAUCCAUAUGGAU   887 Target Full Sequence	1.5	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
EU961636.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:1048   GGUUCUACCCCAAUCCAUAUGGAU   1071 Target Full Sequence	1.5	Zea mays clone 237217 mRNA sequence	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:792   GGUUCUACCCCAAUCCAUAUGGAU   815 Target Full Sequence	1.5	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:791   GGUUCUACCCCAAUCCAUAUGGAU   814 Target Full Sequence	1.5	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:845   GGUUCUACCCCAAUCCAUAUGGAU   868 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:703   GGUUCUACCCCAAUCCAUAUGGAU   726 Target Full Sequence	1.5	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:364   GGUUCUACCCCAAUCCAUAUGGAU   387 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EZ061352.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:117   GGUUCUACCCCAAUCCAUAUGGAU   140 Target Full Sequence	1.5	TSA: Zea mays contig62474, mRNA sequence	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||=|||||||||||=|| targets:1549   GGUUCUACCUCAAUCCAUAUGGAU   1572 Target Full Sequence	2.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|* targets:791   GGUUCUACCCCAAUCCAUAUGGAK   814 Target Full Sequence	2.5	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   ||||*||||||||||||||||=|| targets:793   GGUUYUACCCCAAUCCAUAUGGAU   816 Target Full Sequence	1.5	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
EZ094106.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||||=|=|||||||||||| targets:64   GGUUCUACCUCGAUCCAUAUGAAU   87 Target Full Sequence	2.5	TSA: Zea mays contig29758, mRNA sequence	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   ||||*||||||||||||||||=|| targets:1617   GGUUAUACCCCAAUCCAUAUGGAU   1640 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||*|||||||||||||=|| targets:629   GGUUCUAACCCAAUCCAUAUGGAU   652 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
XM_020549355.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |*|||||||||||||||||||=|| targets:858   GAUUCUACCCCAAUCCAUAUGGAU   881 Target Full Sequence	1.5	PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA	NA	coding protein	psRNATarget
EU951634.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |*|||||||||=|||||||||||| targets:722   GAUUCUACCCCGAUCCAUAUGAAU   745 Target Full Sequence	1.5	Zea mays clone 985982 mRNA sequence	NA	coding protein	psRNATarget
EZ068230.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |||||||*|||||||||||||=|| targets:39   GGUUCUAGCCCAAUCCAUAUGGAU   62 Target Full Sequence	2.5	TSA: Zea mays contig03865, mRNA sequence	NA	coding protein	psRNATarget
LQ238773.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |*|||||||||||||||||||=|| targets:17   GUUUCUACCCCAAUCCAUAUGGAU   40 Target Full Sequence	1.5	Sequence 4768 from Patent EP2985353	NA	coding protein	psRNATarget
JB167104.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |*|||||||||||||||||||=|| targets:17   GUUUCUACCCCAAUCCAUAUGGAU   40 Target Full Sequence	1.5	Sequence 4768 from Patent EP2559767	NA	coding protein	psRNATarget
HI406643.1	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |*|||||||||||||||||||=|| targets:17   GUUUCUACCCCAAUCCAUAUGGAU   40 Target Full Sequence	1.5	Sequence 4768 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   CCAAGAUGGGGUUAGGUAUACUUA   1   |*|||||||||||||||||||*|| targets:3039   GUUUCUACCCCAAUCCAUAUGUAU   3062 Target Full Sequence	1.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget