Search result

BaseInfo

ncRNA ID	novel_zma_miR7759
Species	Zea mays
Class	miRNA
Genome position	Chr5:45952602-45952729 [+]
Reference genome	RefGen_v4
Source	SRR1745812
Length	23
Mature sequence(if miRNA)	1 - CACAUGAUGUUGAUCCAAGGGGA - 23
Stem-loop(if miRNA)	--  C                  G   UG    GGA     -------AGGG G    GAAAAAAUGUG   CA AUGAUGUUGAUCCAAGGG ACG  UGGA   GUGGA           G AUUU           A   || |||||||||||||||||| |||  ||||   |||||           | ||||           U   GU UACUACAACUAGGUUCCC UGU  ACCU   CACCU           A AUUG           U UG  A                  -   GU    --G     AUUAAAAUGUG -    ACAGGCGGCGA
Stem-loop sequence	CACAUGAUGUUGAUCCAAGGGGACGUGUGGAGGAGUGGAAGGGGGAUUUGAAAAAAUGUGAUUAGCGGCGGACAGUUAAGUGUAAAAUUAUCCACGUCCAUGUGUCCCUUGGAUCAACAUCAUAUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163381.1	ncRNA:23   AGGGGAACCUAGUUGUAGUACAC   1   *|||||||||||||||||||||| targets:123   CCCCCUUGGAUCAACAUCAUGUG   145 Target Full Sequence	0.0	Sequence 1045 from Patent EP2559767	NA	coding protein	psRNATarget
HI402920.1	ncRNA:23   AGGGGAACCUAGUUGUAGUACAC   1   *|||||||||||||||||||||| targets:123   CCCCCUUGGAUCAACAUCAUGUG   145 Target Full Sequence	0.0	Sequence 1045 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235050.1	ncRNA:23   AGGGGAACCUAGUUGUAGUACAC   1   *|||||||||||||||||||||| targets:123   CCCCCUUGGAUCAACAUCAUGUG   145 Target Full Sequence	0.0	Sequence 1045 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008676928.2	ncRNA:23   AGGGGAACCUAGUUGUAGUACAC   1   ||||||||||||||||||||*|| targets:2936   UCCCCUUGGAUCAACAUCAUAUG   2958 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g09650, chloroplastic (LOC103651307), mRNA	NA	coding protein	psRNATarget
JB163588.1	ncRNA:23   AGGGGAACCUAGUUGUAGUACAC   1   *=||*|||||||||||||||||| targets:123   GUCCAUUGGAUCAACAUCAUGUG   145 Target Full Sequence	1.0	Sequence 1252 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235257.1	ncRNA:23   AGGGGAACCUAGUUGUAGUACAC   1   *=||*|||||||||||||||||| targets:123   GUCCAUUGGAUCAACAUCAUGUG   145 Target Full Sequence	1.0	Sequence 1252 from Patent EP2985353	NA	coding protein	psRNATarget
HI403127.1	ncRNA:23   AGGGGAACCUAGUUGUAGUACAC   1   *=||*|||||||||||||||||| targets:123   GUCCAUUGGAUCAACAUCAUGUG   145 Target Full Sequence	1.0	Sequence 1252 from Patent EP2074227	NA	coding protein	psRNATarget