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BaseInfo

ncRNA ID novel_zma_miR7754
Species Zea mays
Class miRNA
Genome position Chr4:245614189-245614311 [-]
Reference genome RefGen_v4
Source SRR3341905
Length 24
Mature sequence(if miRNA) 1 - AUAUAGAUUGGGGUAGAACCGAAC - 24
Stem-loop(if miRNA) --      -AU UU     C          GA         UACGGAUU  A  A A      -   A
  UCGGUU   U  CAAUC AUAUGGAUUG  GGGGAUUGA        GG GG G UUUUGA CUU C
  ||||||   |  ||||| ||||||||||  |||||||||        || || | |||||| |||
  AGCCAA   G  GUUAG UAUACCUAAC  CCCCUAACU        CC CC C AAAAUU GGG U
CA      GAU GG     A          UC         --------  -  - -      A   A
Stem-loop sequence UCGGUUAUUUUCAAUCCAUAUGGAUUGGAGGGGAUUGAUACGGAUUGGAGGAGAUUUUGACUUACUAGGGAUUAAAACCCCCUCAAUCCCCCUCAAUCCAUAUAGAUUGGGGUAGAACCGAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU953075.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  ||||||||||||||||||||||||
targets:924   GUUCGGUUCUACCCCAAUCUAUAU   947

0.0 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
BT064935.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  ||||||||||||=|||||||||||
targets:753   GUUCGGUUCUACUCCAAUCUAUAU   776

1.5 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
NM_001156482.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  ||||||||||||||||=|||||||
targets:804   GUUCGGUUCUACCCCAGUCUAUAU   827

1.5 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
EU965203.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  ||||||||||||||||=|||||||
targets:804   GUUCGGUUCUACCCCAGUCUAUAU   827

1.5 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
EZ061352.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||||||||||||||||*||||
targets:113   GUUCGGUUCUACCCCAAUCCAUAU   136

1.5 TSA: Zea mays contig62474, mRNA sequence NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||||||||||||||||*||||
targets:360   GUUCGGUUCUACCCCAAUCCAUAU   383

1.5 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
EU972046.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||||||||||||||||*||||
targets:699   GUUCGGUUCUACCCCAAUCCAUAU   722

1.5 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT062922.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||||||||||||||||*||||
targets:841   GUUCGGUUCUACCCCAAUCCAUAU   864

1.5 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU959258.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||||||||||||||||*||||
targets:787   GUUCGGUUCUACCCCAAUCCAUAU   810

1.5 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959053.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||||||||||||||||*||||
targets:787   GUUCGGUUCUACCCCAAUCCAUAU   810

1.5 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959345.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||||||||||||||||*||||
targets:788   GUUCGGUUCUACCCCAAUCCAUAU   811

1.5 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU961636.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||||||||||||||||*||||
targets:1044   GUUCGGUUCUACCCCAAUCCAUAU   1067

1.5 Zea mays clone 237217 mRNA sequence NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||||||||||||||||*||||
targets:860   GUUCGGUUCUACCCCAAUCCAUAU   883

1.5 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
XM_008672211.2
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||||||||||||||||*||||
targets:886   GUUCGGUUCUACCCCAAUCCAUAU   909

1.5 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||||||||||||||||*||||
targets:1905   GUUCGGUUCUACCCCAAUCCAUAU   1928

1.5 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||||||||||||||||*||||
targets:1905   GUUCGGUUCUACCCCAAUCCAUAU   1928

1.5 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_008672210.2
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||||||||||||||||*||||
targets:1678   GUUCGGUUCUACCCCAAUCCAUAU   1701

1.5 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA NA coding protein psRNATarget
BT055069.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||||||||||||||||*||||
targets:892   GUUCGGUUCUACCCCAAUCCAUAU   915

1.5 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
EU959055.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  ||||||||*||||||||||*||||
targets:789   GUUCGGUUYUACCCCAAUCCAUAU   812

2.5 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
HI406643.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||*|||||||||||||*||||
targets:13   GUUCGUUUCUACCCCAAUCCAUAU   36

2.5 Sequence 4768 from Patent EP2074227 NA coding protein psRNATarget
JB167104.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||*|||||||||||||*||||
targets:13   GUUCGUUUCUACCCCAAUCCAUAU   36

2.5 Sequence 4768 from Patent EP2559767 NA coding protein psRNATarget
LQ238773.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||*|||||||||||||*||||
targets:13   GUUCGUUUCUACCCCAAUCCAUAU   36

2.5 Sequence 4768 from Patent EP2985353 NA coding protein psRNATarget
XM_020549355.1
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||*|||||||||||||*||||
targets:854   GUUCGAUUCUACCCCAAUCCAUAU   877

2.5 PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA NA coding protein psRNATarget
XM_008658331.2
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  ||||||||*||||||||||*||||
targets:1613   GUUCGGUUAUACCCCAAUCCAUAU   1636

2.5 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
XM_008654469.2
ncRNA:24   CAAGCCAAGAUGGGGUUAGAUAUA   1
  |||||*|||||||||||||*||||
targets:3035   GUUCGUUUCUACCCCAAUCCAUAU   3058

2.5 PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA NA coding protein psRNATarget
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