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BaseInfo

ncRNA ID	novel_zma_miR7751
Species	Zea mays
Class	miRNA
Genome position	Chr4:221928917-221929032 [+]
Reference genome	RefGen_v4
Source	SRR3341905
Length	24
Mature sequence(if miRNA)	1 - GUUCGUUUGUAUCGGAUUGCACCC - 24
Stem-loop(if miRNA)	--          AU       --CACC      C     --   UAUUCAAA    --A  U   GUUCGUUUGU  CGGAUUG      CGGAAU GUUCC  ACC        GUUU   UA A   ||||||||||  |||||||      |||||| |||||  |||        ||||   || A   CAAGCAAACG  GCCUAAC      GCCUUG UAAGG  UGG        CGAA   AU A AA          CG       CACCCA      C     AU   ---CCUAA    GAG  U
Stem-loop sequence	GUUCGUUUGUAUCGGAUUGCACCCGGAAUCGUUCCACCUAUUCAAAGUUUAUAUAAAUUAGAGAAGCAAUCCGGUUAGGAAUCGUUCCGACCCACCAAUCCGGCGCAAACGAACAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ240998.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||=||||||||=||||||||| targets:100   GGGUGUAAUCCGAUGCAAACGAAC   123 Target Full Sequence	2.5	Sequence 6993 from Patent EP2985353	NA	coding protein	psRNATarget
HI408868.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||=||||||||=||||||||| targets:100   GGGUGUAAUCCGAUGCAAACGAAC   123 Target Full Sequence	2.5	Sequence 6993 from Patent EP2074227	NA	coding protein	psRNATarget
JB169329.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||=||||||||=||||||||| targets:100   GGGUGUAAUCCGAUGCAAACGAAC   123 Target Full Sequence	2.5	Sequence 6993 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238075.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||||||||||||*|||||||| targets:104   GGGUGCAAUCCGAUAGAAACGAAC   127 Target Full Sequence	1.5	Sequence 4070 from Patent EP2985353	NA	coding protein	psRNATarget
JB166406.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||||||||||||*|||||||| targets:104   GGGUGCAAUCCGAUAGAAACGAAC   127 Target Full Sequence	1.5	Sequence 4070 from Patent EP2559767	NA	coding protein	psRNATarget
HI405945.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||||||||||||*|||||||| targets:104   GGGUGCAAUCCGAUAGAAACGAAC   127 Target Full Sequence	1.5	Sequence 4070 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238078.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||||||||||*|||||||||| targets:104   GGGUGCAAUCCGACACAAACGAAC   127 Target Full Sequence	1.5	Sequence 4073 from Patent EP2985353	NA	coding protein	psRNATarget
JB166409.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||||||||||*|||||||||| targets:104   GGGUGCAAUCCGACACAAACGAAC   127 Target Full Sequence	1.5	Sequence 4073 from Patent EP2559767	NA	coding protein	psRNATarget
HI405948.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||||||||||*|||||||||| targets:104   GGGUGCAAUCCGACACAAACGAAC   127 Target Full Sequence	1.5	Sequence 4073 from Patent EP2074227	NA	coding protein	psRNATarget
EZ109082.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||||||||||*|||||||||| targets:113   GGGUGCAAUCCGACACAAACGAAC   136 Target Full Sequence	1.5	TSA: Zea mays contig44741, mRNA sequence	NA	coding protein	psRNATarget
NM_001138362.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||||||||||*|||||||||| targets:1515   GGGUGCAAUCCGACACAAACGAAC   1538 Target Full Sequence	1.5	Zea mays Enhanced ethylene response protein 5 (LOC100193209), mRNA	NA	coding protein	psRNATarget
BT035415.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||||||||||*|||||||||| targets:1515   GGGUGCAAUCCGACACAAACGAAC   1538 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0059N16 mRNA, complete cds	NA	coding protein	psRNATarget
EU940994.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||||||||||*|||||||||| targets:30   GGGUGCAAUCCGACACAAACGAAC   53 Target Full Sequence	1.5	Zea mays clone 1235065 mRNA sequence	NA	coding protein	psRNATarget
XM_020538690.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||||||||||*|||||||||| targets:4215   GGGUGCAAUCCGACACAAACGAAC   4238 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103627710), mRNA	NA	coding protein	psRNATarget
EU942882.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||=|||||||*|||||||||| targets:168   GGGUGUAAUCCGACACAAACGAAC   191 Target Full Sequence	2.5	Zea mays clone 1543225 mRNA sequence	NA	coding protein	psRNATarget
EU965022.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||=|||||||||*|||||||| targets:1546   GGGUGUAAUCCGAUAGAAACGAAC   1569 Target Full Sequence	2.5	Zea mays clone 283266 agmatine deiminase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156428.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||=|||||||||*|||||||| targets:1546   GGGUGUAAUCCGAUAGAAACGAAC   1569 Target Full Sequence	2.5	Zea mays agmatine deiminase (LOC100283528), mRNA	NA	coding protein	psRNATarget
EZ061700.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |||||||||||||*|||||||||* targets:185   GGGUGCAAUCCGACACAAACGAAA   208 Target Full Sequence	2.5	TSA: Zea mays contig62822, mRNA sequence	NA	coding protein	psRNATarget
EZ107386.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   *||||=|||||||||*|||||||| targets:66   AGGUGUAAUCCGAUAGAAACGAAC   89 Target Full Sequence	2.5	TSA: Zea mays contig43044, mRNA sequence	NA	coding protein	psRNATarget
HI405936.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |*|||||||||||*|||||||||| targets:104   GAGUGCAAUCCGACACAAACGAAC   127 Target Full Sequence	1.5	Sequence 4061 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238066.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |*|||||||||||*|||||||||| targets:104   GAGUGCAAUCCGACACAAACGAAC   127 Target Full Sequence	1.5	Sequence 4061 from Patent EP2985353	NA	coding protein	psRNATarget
JB166397.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |*|||||||||||*|||||||||| targets:104   GAGUGCAAUCCGACACAAACGAAC   127 Target Full Sequence	1.5	Sequence 4061 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238063.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |*|||||||||||*|||||||||| targets:107   GAGUGCAAUCCGACACAAACGAAC   130 Target Full Sequence	1.5	Sequence 4058 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238062.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ||||*||||||||*|||||||||| targets:107   GGGUACAAUCCGACACAAACGAAC   130 Target Full Sequence	1.5	Sequence 4057 from Patent EP2985353	NA	coding protein	psRNATarget
HI405933.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |*|||||||||||*|||||||||| targets:107   GAGUGCAAUCCGACACAAACGAAC   130 Target Full Sequence	1.5	Sequence 4058 from Patent EP2074227	NA	coding protein	psRNATarget
HI405932.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ||||*||||||||*|||||||||| targets:107   GGGUACAAUCCGACACAAACGAAC   130 Target Full Sequence	1.5	Sequence 4057 from Patent EP2074227	NA	coding protein	psRNATarget
JB166393.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ||||*||||||||*|||||||||| targets:107   GGGUACAAUCCGACACAAACGAAC   130 Target Full Sequence	1.5	Sequence 4057 from Patent EP2559767	NA	coding protein	psRNATarget
JB166394.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   |*|||||||||||*|||||||||| targets:107   GAGUGCAAUCCGACACAAACGAAC   130 Target Full Sequence	1.5	Sequence 4058 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239368.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ||||*||||||||*|||||||||| targets:108   GGGUACAAUCCGACACAAACGAAC   131 Target Full Sequence	1.5	Sequence 5363 from Patent EP2985353	NA	coding protein	psRNATarget
HI407238.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ||||*||||||||*|||||||||| targets:108   GGGUACAAUCCGACACAAACGAAC   131 Target Full Sequence	1.5	Sequence 5363 from Patent EP2074227	NA	coding protein	psRNATarget
JB167699.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ||||*||||||||*|||||||||| targets:108   GGGUACAAUCCGACACAAACGAAC   131 Target Full Sequence	1.5	Sequence 5363 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020549216.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ||||*||||||||*|||||||||| targets:235   GGGUACAAUCCGACACAAACGAAC   258 Target Full Sequence	1.5	PREDICTED: Zea mays putative disease resistance protein RGA4 (LOC103649444), mRNA	NA	coding protein	psRNATarget
XM_008674095.2	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ||*||||||||||||*|||||||| targets:2151   GGAUGCAAUCCGAUAGAAACGAAC   2174 Target Full Sequence	1.5	PREDICTED: Zea mays putative MADS-box transcription factor family protein (MADS69), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238070.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ||||*||||=|||*|||||||||| targets:104   GGGUACAAUUCGACACAAACGAAC   127 Target Full Sequence	2.5	Sequence 4065 from Patent EP2985353	NA	coding protein	psRNATarget
JB166401.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ||||*||||=|||*|||||||||| targets:104   GGGUACAAUUCGACACAAACGAAC   127 Target Full Sequence	2.5	Sequence 4065 from Patent EP2559767	NA	coding protein	psRNATarget
HI405940.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ||||*||||=|||*|||||||||| targets:104   GGGUACAAUUCGACACAAACGAAC   127 Target Full Sequence	2.5	Sequence 4065 from Patent EP2074227	NA	coding protein	psRNATarget
JB166391.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ||||**|||||||||*|||||||| targets:108   GGGUAGAAUCCGAUAGAAACGAAC   131 Target Full Sequence	2.5	Sequence 4055 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238060.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ||||**|||||||||*|||||||| targets:108   GGGUAGAAUCCGAUAGAAACGAAC   131 Target Full Sequence	2.5	Sequence 4055 from Patent EP2985353	NA	coding protein	psRNATarget
HI405930.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ||||**|||||||||*|||||||| targets:108   GGGUAGAAUCCGAUAGAAACGAAC   131 Target Full Sequence	2.5	Sequence 4055 from Patent EP2074227	NA	coding protein	psRNATarget
HI405964.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   *****=|||||||||||||||||| targets:106   CCCACUAAUCCGAUACAAACGAAC   129 Target Full Sequence	1.0	Sequence 4089 from Patent EP2074227	NA	coding protein	psRNATarget
JB166425.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   *****=|||||||||||||||||| targets:106   CCCACUAAUCCGAUACAAACGAAC   129 Target Full Sequence	1.0	Sequence 4089 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238094.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   *****=|||||||||||||||||| targets:106   CCCACUAAUCCGAUACAAACGAAC   129 Target Full Sequence	1.0	Sequence 4089 from Patent EP2985353	NA	coding protein	psRNATarget
EZ060491.1	ncRNA:24   CCCACGUUAGGCUAUGUUUGCUUG   1   ******||||||=||||||||||| targets:221   CCCAUAAAUCCGGUACAAACGAAC   244 Target Full Sequence	2.5	TSA: Zea mays contig61613, mRNA sequence	NA	coding protein	psRNATarget