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BaseInfo

ncRNA ID	novel_zma_miR7748
Species	Zea mays
Class	miRNA
Genome position	Chr10:16132686-16132800 [+]
Reference genome	RefGen_v4
Source	SRR3341905
Length	23
Mature sequence(if miRNA)	93 - AAAUGGAAUAAAAUGUAGAGACU - 115
Stem-loop(if miRNA)	--  C  U                   AUAU     GU       A              UC CU UAUUUUAUUCCAUUUUAGU    AAAUU  CAAAUAU GAAAUUAAAAUA   || || |||||||||||||||||||    |||||  ||||||| |||||||||||G   AG GA GUAAAAUAAGGUAAAAUCA    UUUAA  GUUUAUA CUUUGAUUUUGA UC  A  U                   AGGU     AG       C
Stem-loop sequence	UCCCUUUAUUUUAUUCCAUUUUAGUAUAUAAAUUGUCAAAUAUAGAAAUUAAAAUAGAGUUUUAGUUUCCAUAUUUGGAAAUUUUGGAACUAAAAUGGAAUAAAAUGUAGAGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT036582.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||||||||||||||||||||| targets:842   AGUCUCUACAUUUUAUUCCAUUU   864 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||||||||||||||||||||| targets:842   AGUCUCUACAUUUUAUUCCAUUU   864 Target Full Sequence	0.0	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   |||||||*||||||||||||||| targets:2151   AGUCUCUCCAUUUUAUUCCAUUU   2173 Target Full Sequence	1.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*|||||||||||||||||| targets:999   AGUCCCUACAUUUUAUUCCAUUU   1021 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*|||||||||||||=|||| targets:1571   AGUCCCUACAUUUUAUUCUAUUU   1593 Target Full Sequence	2.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   |||=*|||||||||||||||||| targets:579   AGUUCCUACAUUUUAUUCCAUUU   601 Target Full Sequence	1.0	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*|||||||||||||=|||| targets:71   AGUCCCUACAUUUUAUUCUAUUU   93 Target Full Sequence	2.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
HI403095.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||||||||||||=||||| targets:31   AGUCCCUACAUUUUAUUUCAUUU   53 Target Full Sequence	2.5	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||||||||||||=||||| targets:31   AGUCCCUACAUUUUAUUUCAUUU   53 Target Full Sequence	2.5	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
JB163556.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||||||||||||=||||| targets:31   AGUCCCUACAUUUUAUUUCAUUU   53 Target Full Sequence	2.5	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
BT063047.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||*||||||||||||||| targets:2099   AGUCCCUUCAUUUUAUUCCAUUU   2121 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174830.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||*||||||||||||||| targets:2099   AGUCCCUUCAUUUUAUUCCAUUU   2121 Target Full Sequence	2.0	Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||*||||||||||||||| targets:294   AGUCCCUCCAUUUUAUUCCAUUU   316 Target Full Sequence	2.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
BT019141.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*|**||||||||||||||| targets:170   AGUCCCAUCAUUUUAUUCCAUUU   192 Target Full Sequence	3.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
EU967664.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   |||||||*||*|||||||||||| targets:1126   AGUCUCUCCACUUUAUUCCAUUU   1148 Target Full Sequence	2.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   |||||||*||*|||||||||||| targets:1126   AGUCUCUCCACUUUAUUCCAUUU   1148 Target Full Sequence	2.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
EZ052166.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*|||*|||||||||||||| targets:779   AGUCCCUAGAUUUUAUUCCAUUU   801 Target Full Sequence	2.0	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget
HI406713.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||*||||||||||||||| targets:169   AGUCCCUCCAUUUUAUUCCAUUU   191 Target Full Sequence	2.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
HI406713.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*|**||||||||||||||| targets:45   AGUCCCAUCAUUUUAUUCCAUUU   67 Target Full Sequence	3.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
JB167174.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||*||||||||||||||| targets:169   AGUCCCUCCAUUUUAUUCCAUUU   191 Target Full Sequence	2.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
JB167174.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*|**||||||||||||||| targets:45   AGUCCCAUCAUUUUAUUCCAUUU   67 Target Full Sequence	3.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||*||||||||||||||| targets:169   AGUCCCUCCAUUUUAUUCCAUUU   191 Target Full Sequence	2.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*|**||||||||||||||| targets:45   AGUCCCAUCAUUUUAUUCCAUUU   67 Target Full Sequence	3.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
HI403052.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||*||||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAUUU   51 Target Full Sequence	2.0	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||*||||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAUUU   51 Target Full Sequence	2.0	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
JB163513.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||*||||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAUUU   51 Target Full Sequence	2.0	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*|||||*|||||||||||| targets:29   AGUCCCUACACUUUAUUCCAUUU   51 Target Full Sequence	2.5	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
JB163455.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*|||||*|||||||||||| targets:29   AGUCCCUACACUUUAUUCCAUUU   51 Target Full Sequence	2.5	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget
HI402994.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*|||||*|||||||||||| targets:29   AGUCCCUACACUUUAUUCCAUUU   51 Target Full Sequence	2.5	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||*||||||||||||||| targets:78   AGUCCCUCCAUUUUAUUCCAUUU   100 Target Full Sequence	2.0	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
HI406419.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||*||||||||||||||| targets:78   AGUCCCUCCAUUUUAUUCCAUUU   100 Target Full Sequence	2.0	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
JB166880.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||*||||||||||||||| targets:78   AGUCCCUCCAUUUUAUUCCAUUU   100 Target Full Sequence	2.0	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001305845.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   |*|||=|*||||||||||||||| targets:2084   AAUCUUUCCAUUUUAUUCCAUUU   2106 Target Full Sequence	2.0	Zea mays uncharacterized LOC542022 (LOC542022), mRNA	NA	coding protein	psRNATarget
XM_020550478.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*||*||||||||||||||* targets:2650   AGUCCCUUCAUUUUAUUCCAUUG   2672 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA	NA	coding protein	psRNATarget
EZ052038.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   |||||*|*||||||||||||||* targets:201   AGUCUAUCCAUUUUAUUCCAUUC   223 Target Full Sequence	3.0	TSA: Zea mays contig53158, mRNA sequence	NA	coding protein	psRNATarget
BT083561.2	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   |||||*|*||||||||||||||* targets:204   AGUCUAUCCAUUUUAUUCCAUUC   226 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0012F08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654984.2	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   ||||*|**||||||||||||||| targets:2933   AGUCCCAUCAUUUUAUUCCAUUU   2955 Target Full Sequence	3.0	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
EU972680.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   =||-|||=|||||||||*||||| targets:745   GGU-UCUGCAUUUUAUUACAUUU   766 Target Full Sequence	2.5	Zea mays clone 385839 solute carrier family 2, facilitated glucose transporter member 8 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008657966.2	ncRNA:19   AGAUGUAAAAUAAGGUAAA   1   *|||||||||||||=|||| targets:1   CCUACAUUUUAUUCUAUUU   19 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103635535 (LOC103635535), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548522.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   |*|=*|||=|||||||||||||* targets:1243   AAUUACUAUAUUUUAUUCCAUUA   1265 Target Full Sequence	3.0	PREDICTED: Zea mays UDP-glycosyltransferase 85A5-like (LOC109944057), mRNA	NA	coding protein	psRNATarget
BT054105.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   |*|=*|||=|||||||||||||* targets:1086   AAUUACUAUAUUUUAUUCCAUUA   1108 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0104G11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546986.1	ncRNA:23   UCAGAGAUGUAAAAUAAGGUAAA   1   |*|=*|||=|||||||||||||* targets:1081   AAUUACUAUAUUUUAUUCCAUUA   1103 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100279354 (LOC100279354), mRNA	NA	coding protein	psRNATarget