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BaseInfo

ncRNA ID	novel_zma_miR7746
Species	Zea mays
Class	miRNA
Genome position	Chr3:10753483-10753667 [-]
Reference genome	RefGen_v4
Source	SRR3341905
Length	20
Mature sequence(if miRNA)	166 - UGUUUGGAACCCCUAGAGCU - 185
Stem-loop(if miRNA)	--         C C      C      C      G    U       CA C      -A   -----          ----                    UGUUUGGAA C CUAGAG UAAUAG UAGCUA CUAA AAAUUAU  G UGGGUU  GAG     UCAGCUAAUG    AACUAAUUGUUAGCUAUC   ||||||||| | |||||| |||||| |||||| |||| |||||||  | ||||||  |||     ||||||||||    |||||||||||||||||U   ACAAACCUU G GAUCUU AUUAUC AUCGAU GAUU UUUAAUA  C ACCCAA  UUU     AGUCGAUUAU    UUGAUUAACAAUCGAUAC GG         A A      C      A      -    -       AA A      GG   GUGGG          GGUG
Stem-loop sequence	UGUUUGGAACCCCUAGAGCUAAUAGCUAGCUAGCUAAUAAAUUAUCAGCUGGGUUAGAGUCAGCUAAUGAACUAAUUGUUAGCUAUCUCAUAGCUAACAAUUAGUUGUGGUAUUAGCUGAGGGUGUUUGGAACCCAACAAAUAAUUUUUAGUAGCUAACUAUUACUUCUAGAGAUUCCAAACAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT064271.1	ncRNA:20   UCGAGAUCCCCAAGGUUUGU   1   |||||||||||||||||||| targets:906   AGCUCUAGGGGUUCCAAACA   925 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0154L01 mRNA, complete cds	NA	coding protein	psRNATarget
EU942960.1	ncRNA:20   UCGAGAUCCCCAAGGUUUGU   1   ||||||||*||||||||||| targets:156   AGCUCUAGAGGUUCCAAACA   175 Target Full Sequence	1.5	Zea mays clone 1547841 mRNA sequence	NA	coding protein	psRNATarget
XM_020544205.1	ncRNA:20   UCGAGAUCCCCAAGGUUUGU   1   |*|||||||||||||||||| targets:839   AUCUCUAGGGGUUCCAAACA   858 Target Full Sequence	1.0	PREDICTED: Zea mays probable tRNA N6-adenosine threonylcarbamoyltransferase (LOC103639367), mRNA	NA	coding protein	psRNATarget
XM_020544398.1	ncRNA:20   UCGAGAUCCCCAAGGUUUGU   1   |*|||||||||||||||||| targets:1406   AUCUCUAGGGGUUCCAAACA   1425 Target Full Sequence	1.0	PREDICTED: Zea mays tRNA N6-adenosine threonylcarbamoyltransferase-like (LOC109939365), mRNA	NA	coding protein	psRNATarget
XM_020551910.1	ncRNA:20   UCGAGAUCCCCAAGGUUUGU   1   |*|||||||||||||||||| targets:872   AUCUCUAGGGGUUCCAAACA   891 Target Full Sequence	1.0	PREDICTED: Zea mays probable tRNA N6-adenosine threonylcarbamoyltransferase (LOC103641568), mRNA	NA	coding protein	psRNATarget
AY104238.1	ncRNA:20   UCGAGAUCCCCAAGGUUUGU   1   ||*|=||||||||||||||| targets:290   AGAUUUAGGGGUUCCAAACA   309 Target Full Sequence	2.0	Zea mays PCO120536 mRNA sequence	NA	coding protein	psRNATarget
XM_008674565.2	ncRNA:20   UCGAGAUCCCCAAGGUUUGU   1   ||*|=||||||||||||||| targets:951   AGAUUUAGGGGUUCCAAACA   970 Target Full Sequence	2.0	PREDICTED: Zea mays RING finger and CHY zinc finger domain-containing protein 1 (LOC100280509), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT055195.1	ncRNA:20   UCGAGAUCCCCAAGGUUUGU   1   ||||*|||*||||||||||| targets:632   AGCUGUAGAGGUUCCAAACA   651 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0132P03 mRNA, complete cds	NA	coding protein	psRNATarget
BT035603.1	ncRNA:20   UCGAGAUCCCCAAGGUUUGU   1   |||||*||||||||||||*| targets:771   AGCUCGAGGGGUUCCAAAGA   790 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0071K11 mRNA, complete cds	NA	coding protein	psRNATarget
BT067253.1	ncRNA:20   UCGAGAUCCCCAAGGUUUGU   1   ||||*|||*||||||||||| targets:1084   AGCUGUAGAGGUUCCAAACA   1103 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0357C03 mRNA, complete cds	NA	coding protein	psRNATarget