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BaseInfo

ncRNA ID novel_zma_miR7724
Species Zea mays
Class miRNA
Genome position Chr2:68158107-68158283 [-]
Reference genome RefGen_v4
Source SRR3341905
Length 22
Mature sequence(if miRNA) 156 - AGCAUUGGGAUGGAUGAACACU - 177
Stem-loop(if miRNA) A   -     -A      A   ----    -UU   UGA       --     ---GU  A G    GA  AAC A      UU       --   AUA
 GCA UUGGG  UGGAUG ACA    CUAG   GUU   AUGGGAA  GGAGG     GG C UGAU  AG   G CCCUGA  AAAAGGC  CGG   A
 ||| |||||  |||||| |||    ||||   |||   |||||||  |||||     || | ||||  ||   | ||||||  |||||||  |||
 CGU AACUU  AUUUAU UGU    GAUC   CAG   UACCCUU  CCUCC     CC G AUUA  UC   C GGGGCU  UUUUCCG  GUC   C
-   C     AG      A   UCAA    UUU   --G       UA     GUUGU  - G    -G  --C -      -C       UU   AAU
Stem-loop sequence AGCAUUGGGAUGGAUGAACACUAGUUGUUUGAAUGGGAAGGAGGGUGGACGUGAUGAAGAACGACCCUGAUUAAAAGGCCGGAUAACUAACUGUUGCCUUUUCUCGGGGCCCUGAUUAGGCCUGUUGCCUCCAUUUCCCAUGGACUUUCUAGAACUUGUAUAUUUAGAUUCAACUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ053540.1
ncRNA:22   UCACAAGUAGGUAGGGUUACGA   1
  **||**||||||||||||||||
targets:79   CCUGAGCAUCCAUCCCAAUGCU   100

2.0 TSA: Zea mays contig54662, mRNA sequence NA coding protein psRNATarget