Search result

BaseInfo

ncRNA ID	novel_zma_miR7720
Species	Zea mays
Class	miRNA
Genome position	Chr2:29667381-29667502 [+]
Reference genome	RefGen_v4
Source	SRR3341905
Length	24
Mature sequence(if miRNA)	99 - AUAUGGAUUGAGAUAGAACCGAAC - 122
Stem-loop(if miRNA)	--      -AU                  U     GAUUGAUAC      GA  A A      -   A   UCGGUU   UUUCAAUCCAUAUGGAUU GAGGG         GGAUUG  GG G UUUUGA CUU C   ||||||   |||||||||||||||||| |||||         ||||||  || | |||||| |||   AGCCAA   AGAGUUAGGUAUAUUUAA CUCCC         UCUAAC  CC C AAAAUU GAG U CA      GAU                  -     ---------      UC  - -      A   A
Stem-loop sequence	UCGGUUAUUUUCAAUCCAUAUGGAUUUGAGGGGAUUGAUACGGAUUGGAGGAGAUUUUGACUUACUAGAGAUUAAAACCCCUCAAUCUCCCUCAAUUUAUAUGGAUUGAGAUAGAACCGAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008658561.2	ncRNA:24   CAAGCCAAGAUAGAGUUAGGUAUA   1   |||||||||||*|||||||||||| targets:216   GUUCGGUUCUACCUCAAUCCAUAU   239 Target Full Sequence	1.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   CAAGCCAAGAUAGAGUUAGGUAUA   1   |||||||||||*|||||||||||| targets:1545   GUUCGGUUCUACCUCAAUCCAUAU   1568 Target Full Sequence	1.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   CAAGCCAAGAUAGAGUUAGGUAUA   1   ||*****|||*||||||||||||| targets:422   GUCAAAAUCUCUCUCAAUCCAUAU   445 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
XM_020549432.1	ncRNA:24   CAAG-----CCAAGAUAGAGUUAGGUAUA   1   *|||-----||||||||=||||||||||| targets:1932   AUUCAUAUAGGUUCUAUUUCAAUCCAUAU   1960 Target Full Sequence	1.5	PREDICTED: Zea mays UDP-Glycosyltransferase superfamily protein (IDP1634), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008673800.2	ncRNA:24   CAAG-----CCAAGAUAGAGUUAGGUAUA   1   *|||-----||||||||=||||||||||| targets:1643   AUUCAUAUAGGUUCUAUUUCAAUCCAUAU   1671 Target Full Sequence	1.5	PREDICTED: Zea mays UDP-Glycosyltransferase superfamily protein (IDP1634), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AF277454.1	ncRNA:24   CAAGCCAAGAUAGAGUUAGGUAUA   1   |||||*||=*|||||||||||||| targets:1619   GUUCGUUUUGAUCUCAAUCCAUAU   1642 Target Full Sequence	3.0	Zea mays UMP synthase (UMPS) mRNA, UMPS-1 allele, complete cds	NA	coding protein	psRNATarget
NM_001112411.1	ncRNA:24   CAAGCCAAGAUAGAGUUAGGUAUA   1   |||||*||=*|||||||||||||| targets:1619   GUUCGUUUUGAUCUCAAUCCAUAU   1642 Target Full Sequence	3.0	Zea mays uncharacterized LOC732794 (IDP506), mRNA	NA	coding protein	psRNATarget
XM_020550075.1	ncRNA:24   CAAGCCAAGAUAGAGUUAGGUAUA   1   |||||*||=*|||||||||||||| targets:718   GUUCGUUUUGAUCUCAAUCCAUAU   741 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC732794 (IDP506), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550074.1	ncRNA:24   CAAGCCAAGAUAGAGUUAGGUAUA   1   |||||*||=*|||||||||||||| targets:710   GUUCGUUUUGAUCUCAAUCCAUAU   733 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC732794 (IDP506), transcript variant X1, mRNA	NA	coding protein	psRNATarget