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BaseInfo

ncRNA ID novel_zma_miR7716
Species Zea mays
Class miRNA
Genome position Chr10:121725705-121725920 [+]
Reference genome RefGen_v4
Source SRR3341905
Length 22
Mature sequence(if miRNA) 1 - GGAGGACUAAACAUGAGCUGAU - 22
Stem-loop(if miRNA) --        A       G         AAA      ACAUAA    ----UG            A    AUC    U   C           CU      A U     ACU
  GGAGGACU AACAUGA CUGAUUAUA   CUAAUU      ACAG      GCUAAUUCGCGA ACAA   UAUU GGC UAAUUAGUCUA  AUUAGC C UGUUU   G
  |||||||| ||||||| |||||||||   ||||||      ||||      |||||||||||| ||||   |||| ||| |||||||||||  |||||| | |||||   U
  CCUCUUGA UUGUACU GAUUAAUAU   GAUUAA      UGUC      CGAUUAAGUGCU UGUU   AUAG UCG AUUAAUUAGAU  UAAUCG G ACAAA   A
AU        C       A         CUC      ----CA    CAAAAA            C    -AA    U   U           AU      A U     ACG
Stem-loop sequence GGAGGACUAAACAUGAGCUGAUUAUAAAACUAAUUACAUAAACAGUGGCUAAUUCGCGAAACAAAUCUAUUUGGCCUAAUUAGUCUACUAUUAGCACUUGUUUACUGUAGCAAAACAUGAGCUAAUUAUAGAUUAAUUAUGCUUGAUAAAUUGUCUCGUGAAUUAGCAAAAACCUGUACAAUUAGCUCUAUAAUUAGAUCAUGUUCAGUUCUCCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU943345.1
ncRNA:22   UAGUCGAGUACAAAUCAGGAGG   1
  ||=||*|||||||||||=||||
targets:529   AUUAGAUCAUGUUUAGUUCUCC   550

2.5 Zea mays clone 1604375 mRNA sequence NA coding protein psRNATarget