Search result

BaseInfo

ncRNA ID	novel_zma_miR7710
Species	Zea mays
Class	miRNA
Genome position	Chr2:187569586-187569719 [+]
Reference genome	RefGen_v4
Source	SRR3341905
Length	24
Mature sequence(if miRNA)	111 - ACUUGGAUGAGAAAUGAAGGCACC - 134
Stem-loop(if miRNA)	--UA                   GG    --     ---GCA  GGCACACAGAAGAAACAGACGACGCG     CCUUCAUUUCUCAUCCAGG  GUGA  GGGCA      GU                          G     |||||||||||||||||||  ||||  |||||      ||     GGAAGUAAAGAGUAGGUUC  CACU  UCUGU      UC                          G CCAC                   -A    UA     AAAAGA  AAAGAAGACACACGGUGGGAACUGGU
Stem-loop sequence	UACCUUCAUUUCUCAUCCAGGGGGUGAGGGCAGCAGUGGCACACAGAAGAAACAGACGACGCGGGUGGUCAAGGGUGGCACACAGAAGAAACUAGAAAAUGUCUAUUCACACUUGGAUGAGAAAUGAAGGCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544412.1	ncRNA:24   CCACGGAAGUAAAGAGUAGGUUCA   1   |||||||||||||||=|||||||| targets:1671   GGUGCCUUCAUUUCUUAUCCAAGU   1694 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103640402 (LOC103640402), mRNA	NA	coding protein	psRNATarget
BT087533.2	ncRNA:24   CCACGGAAGUAAAGAGUAGGUUCA   1   |||||*||||||||||||=||||| targets:974   GGUGCAUUCAUUUCUCAUUCAAGU   997 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0103K23 mRNA, complete cds	NA	coding protein	psRNATarget
BT016654.1	ncRNA:24   CCACGGAAGUAAAGAGUAGGUUCA   1   ||**|||||=|||=|||||||||| targets:847   GGAUCCUUCGUUUUUCAUCCAAGU   870 Target Full Sequence	2.5	Zea mays clone Contig487 mRNA sequence	NA	coding protein	psRNATarget
BT017211.1	ncRNA:24   CCACGGAAGUAAAGAGUAGGUUCA   1   ||**|||||*|||=|||||||||| targets:531   GGAUCCUUCCUUUUUCAUCCAAGU   554 Target Full Sequence	2.5	Zea mays clone EL01N0372B08.c mRNA sequence	NA	coding protein	psRNATarget
EU973820.1	ncRNA:24   CCACGGAAGUAAAGAGUAGGUUCA   1   ||**|||||*|||=|||||||||| targets:560   GGAUCCUUCCUUUUUCAUCCAAGU   583 Target Full Sequence	2.5	Zea mays clone 418506 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT086619.1	ncRNA:24   CCACGGAAGUAAAGAGUAGGUUCA   1   ||**|||||*|||=|||||||||| targets:1001   GGAUCCUUCCUUUUUCAUCCAAGU   1024 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0192D13 mRNA, complete cds	NA	coding protein	psRNATarget
BT042893.1	ncRNA:24   CCACGGAAGUAAAGAGUAGGUUCA   1   ||**|||||*|||=|||||||||| targets:1419   GGAUCCUUCCUUUUUCAUCCAAGU   1442 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0059G09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148739.1	ncRNA:24   CCACGGAAGUAAAGAGUAGGUUCA   1   ||**|||||*|||=|||||||||| targets:1419   GGAUCCUUCCUUUUUCAUCCAAGU   1442 Target Full Sequence	2.5	Zea mays uncharacterized LOC100274379 (LOC100274379), mRNA	NA	coding protein	psRNATarget
EU966403.1	ncRNA:24   CCACGGAAGUAAAGAGUAGGUUCA   1   ||**=|||||||||*||||||||* targets:686   GGCAUCUUCAUUUCGCAUCCAAGA   709 Target Full Sequence	2.5	Zea mays clone 294163 mRNA sequence	NA	coding protein	psRNATarget