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BaseInfo

ncRNA ID novel_zma_miR7708
Species Zea mays
Class miRNA
Genome position Chr2:165291301-165291362 [+]
Reference genome RefGen_v4
Source SRR3341905
Length 24
Mature sequence(if miRNA) 39 - AUUUUACACUCGGCAAAGAACACU - 62
Stem-loop(if miRNA) --C                CU  GACAC  GA
   GUUCUUUGCCGAGUGU  AA     UC  C
   ||||||||||||||||  ||     ||
   CAAGAAACGGCUCACA  UU     AG  A
UCA                UU  --AUC  AA
Stem-loop sequence CGUUCUUUGCCGAGUGUCUAAGACACUCGACAAAGACUAUUUUACACUCGGCAAAGAACACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001138164.1
ncRNA:24   UCACAAGAAACGGCUCACAUUUUA   1
  ***|*||||||||||||||*||||
targets:1295   UCGGCUCUUUGCCGAGUGUCAAAU   1318

1.5 Zea mays OSIGBa0147B06.5 protein (LOC100192993), mRNA NA coding protein psRNATarget
BT035133.1
ncRNA:24   UCACAAGAAACGGCUCACAUUUUA   1
  ***|*||||||||||||||*||||
targets:1295   UCGGCUCUUUGCCGAGUGUCAAAU   1318

1.5 Zea mays full-length cDNA clone ZM_BFb0041G19 mRNA, complete cds NA coding protein psRNATarget
XM_008668897.2
ncRNA:24   UCACAAGAAACGGCUCACAUUUUA   1
  ***|*||||||||||||||*||||
targets:1243   UCGGCUCUUUGCCGAGUGUCAAAU   1266

1.5 PREDICTED: Zea mays OSIGBa0147B06.5 protein (LOC100192993), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547384.1
ncRNA:24   UCACAAGAAACGGCUCACAUUUUA   1
  ***|*||||||||||||||*||||
targets:1256   UCGGCUCUUUGCCGAGUGUCAAAU   1279

1.5 PREDICTED: Zea mays OSIGBa0147B06.5 protein (LOC100192993), transcript variant X1, mRNA NA coding protein psRNATarget