Search result

BaseInfo

ncRNA ID	novel_zma_miR7695
Species	Zea mays
Class	miRNA
Genome position	Chr1:202471389-202471471 [-]
Reference genome	RefGen_v4
Source	SRR3341905;SRR5100248
Length	21
Mature sequence(if miRNA)	63 - UUGGAGAGGAUUGAGGGGAUU - 83
Stem-loop(if miRNA)	--      A         -              U   U   A   UUGGAG GGAUUGAGG GGAUUAAAUCCCUU CUA UCA U   |||||| ||||||||| |||||||||||||| ||| |||   AACUUC CCUAACUUC CCUAAUUUAGGGAA GAU AGU U CU      C         G              C   C   U
Stem-loop sequence	UUGGAGAGGAUUGAGGGGAUUAAAUCCCUUUCUAUUCAAUUUUGACUAGCAAGGGAUUUAAUCCGCUUCAAUCCCCUUCAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539542.1	ncRNA:21   UUAGGGGAGUUAGGAGAGGUU   1   **||=|||||||=|||||||| targets:131   UUUCUCCUCAAUUCUCUCCAA   151 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:21   UUAGGGGAGUUAGGAGAGGUU   1   **||=|||||||=|||||||| targets:131   UUUCUCCUCAAUUCUCUCCAA   151 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:21   UUAGGGGAGUUAGGAGAGGUU   1   **||=|||||||=|||||||| targets:131   UUUCUCCUCAAUUCUCUCCAA   151 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU941872.1	ncRNA:21   UUAGG-GGAGUUAGGAGAGGUU   1   **|||-|||||||||||||||| targets:93   UUUCCACCUCAAUCCUCUCCAA   114 Target Full Sequence	2.0	Zea mays clone 1471472 mRNA sequence	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:21   UUAGG-GGAGUUAGGAGAGGUU   1   **|||-|||||||||||||||| targets:2427   UUUCCACCUCAAUCCUCUCCAA   2448 Target Full Sequence	2.0	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
JB166530.1	ncRNA:21   UUAGGGGAGUUAGGAGAGGUU   1   |=*|||=|||||||||||||* targets:87   AGCCCCUUCAAUCCUCUCCAU   107 Target Full Sequence	3.0	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
HI406069.1	ncRNA:21   UUAGGGGAGUUAGGAGAGGUU   1   |=*|||=|||||||||||||* targets:87   AGCCCCUUCAAUCCUCUCCAU   107 Target Full Sequence	3.0	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:21   UUAGGGGAGUUAGGAGAGGUU   1   |=*|||=|||||||||||||* targets:87   AGCCCCUUCAAUCCUCUCCAU   107 Target Full Sequence	3.0	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
BT036654.1	ncRNA:21   UUAGGGGAGUUAGGAGAGGUU   1   |=*|||=|||||||||||||* targets:1040   AGCCCCUUCAAUCCUCUCCAU   1060 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:21   UUAGGGGAGUUAGGAGAGGUU   1   |=*|||=|||||||||||||* targets:873   AGCCCCUUCAAUCCUCUCCAU   893 Target Full Sequence	3.0	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:21   UUAGGGGAGUUAGGAGAGGUU   1   |=*|||=|||||||||||||* targets:873   AGCCCCUUCAAUCCUCUCCAU   893 Target Full Sequence	3.0	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
JB163816.1	ncRNA:21   UUAGGGGAGUUAGGAGAGGUU   1   |*||=|||||||||*|||||| targets:29   AUUCUCCUCAAUCCCCUCCAA   49 Target Full Sequence	2.5	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
HI403355.1	ncRNA:21   UUAGGGGAGUUAGGAGAGGUU   1   |*||=|||||||||*|||||| targets:29   AUUCUCCUCAAUCCCCUCCAA   49 Target Full Sequence	2.5	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:21   UUAGGGGAGUUAGGAGAGGUU   1   |*||=|||||||||*|||||| targets:29   AUUCUCCUCAAUCCCCUCCAA   49 Target Full Sequence	2.5	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget