Search result

BaseInfo

ncRNA ID novel_zma_miR7688
Species Zea mays
Class miRNA
Genome position Chr5:69419903-69420042 [+]
Reference genome RefGen_v4
Source SRR1745812
Length 21
Mature sequence(if miRNA) 1 - AACCAGACUGUUUGCAGCCCC - 21
Stem-loop(if miRNA) --      A                         A      GU           ----    -     ACAA
  AACCAG CUGUUUGCAGCCCCUCACAAAAAUG GGAUAG  CCCACCUGCAG    ACCA AUAAC    U
  |||||| ||||||||||||||||||||||||| ||||||  |||||||||||    |||| |||||    U
  UUGGUC GACAAACGUCGGGGAGUGUUUUUAC CCUAUC  GGGUGGACGUC    UGGU UAUUG    A
GU      C                         C      UG           CAGG    C     CAAA
Stem-loop sequence AACCAGACUGUUUGCAGCCCCUCACAAAAAUGAGGAUAGGUCCCACCUGCAGACCAAUAACACAAUUAAAACGUUAUCUGGUGGACCUGCAGGUGGGGUCUAUCCCCAUUUUUGUGAGGGGCUGCAAACAGCCUGGUUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163883.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  |||||||||||||||||||||
targets:114   GGGGCUGCAAACAGUCUGGUU   134

0.0 Sequence 1547 from Patent EP2559767 NA coding protein psRNATarget
LQ235552.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  |||||||||||||||||||||
targets:114   GGGGCUGCAAACAGUCUGGUU   134

0.0 Sequence 1547 from Patent EP2985353 NA coding protein psRNATarget
HI403422.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  |||||||||||||||||||||
targets:114   GGGGCUGCAAACAGUCUGGUU   134

0.0 Sequence 1547 from Patent EP2074227 NA coding protein psRNATarget
EZ073016.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  ||||||||||||||*||||||
targets:51   GGGGCUGCAAACAGCCUGGUU   71

1.5 TSA: Zea mays contig08653, mRNA sequence NA coding protein psRNATarget
JB163804.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  ||||||||||||||*||||||
targets:175   GGGGCUGCAAACAGCCUGGUU   195

1.5 Sequence 1468 from Patent EP2559767 NA coding protein psRNATarget
LQ235473.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  ||||||||||||||*||||||
targets:175   GGGGCUGCAAACAGCCUGGUU   195

1.5 Sequence 1468 from Patent EP2985353 NA coding protein psRNATarget
HI403343.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  ||||||||||||||*||||||
targets:175   GGGGCUGCAAACAGCCUGGUU   195

1.5 Sequence 1468 from Patent EP2074227 NA coding protein psRNATarget
XM_008653247.2
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  ||||||||||||||*||||||
targets:136   GGGGCUGCAAACAGCCUGGUU   156

1.5 PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA NA coding protein psRNATarget
EU968721.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  ||||||*||||||||||||||
targets:1040   GGGGCUACAAACAGUCUGGUU   1060

1.0 Zea mays clone 323697 tyrosine specific protein phosphatase family protein mRNA, complete cds NA coding protein psRNATarget
XM_020547635.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  |||||||||||||*|||||||
targets:2556   GGGGCUGCAAACACUCUGGUU   2576

1.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X7, mRNA NA coding protein psRNATarget
AY111544.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  |||||||||||||*|||||||
targets:980   GGGGCUGCAAACACUCUGGUU   1000

1.5 Zea mays CL947_1 mRNA sequence NA coding protein psRNATarget
X55314.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  |||||||||||||*|||||||
targets:1024   GGGGCUGCAAACACUCUGGUU   1044

1.5 Zea mays A2 gene NA coding protein psRNATarget
XM_020547631.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  |||||||||||||*|||||||
targets:3456   GGGGCUGCAAACACUCUGGUU   3476

1.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547630.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  |||||||||||||*|||||||
targets:3473   GGGGCUGCAAACACUCUGGUU   3493

1.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547634.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  |||||||||||||*|||||||
targets:4331   GGGGCUGCAAACACUCUGGUU   4351

1.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020547633.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  |||||||||||||*|||||||
targets:4334   GGGGCUGCAAACACUCUGGUU   4354

1.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020547632.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  |||||||||||||*|||||||
targets:4352   GGGGCUGCAAACACUCUGGUU   4372

1.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020547629.1
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  |||||||||||||*|||||||
targets:4354   GGGGCUGCAAACACUCUGGUU   4374

1.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008651435.2
ncRNA:21   CCCCGACGUUUGUCAGACCAA   1
  *|||||*|||=||||||||||
targets:470   AGGGCUACAAGCAGUCUGGUU   490

2.5 PREDICTED: Zea mays scarecrow-like protein 1 (LOC103630377), mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.