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BaseInfo

ncRNA ID	novel_zma_miR7685
Species	Zea mays
Class	miRNA
Genome position	Chr1:234835133-234835178 [+]
Reference genome	RefGen_v4
Source	SRR3341905
Length	20
Mature sequence(if miRNA)	1 - UGACACUCGGCAAAGAUUCU - 20
Stem-loop(if miRNA)	--U               UUCUU    GACACUCGGCAAAGA     U    |||||||||||||||    CUGUGAGCCGUUUCU     U CCC               UAUCA
Stem-loop sequence	UGACACUCGGCAAAGAUUCUUUUACUAUUCUUUGCCGAGUGUCCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406693.1	ncRNA:20   UCUU-AGAAACGGCUCACAGU   1   |||=-|||||||||||||||| targets:64   AGAGCUCUUUGCCGAGUGUCA   84 Target Full Sequence	3.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:20   UCUU-AGAAACGGCUCACAGU   1   |||=-|||||||||||||||| targets:64   AGAGCUCUUUGCCGAGUGUCA   84 Target Full Sequence	3.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
JB167154.1	ncRNA:20   UCUU-AGAAACGGCUCACAGU   1   |||=-|||||||||||||||| targets:64   AGAGCUCUUUGCCGAGUGUCA   84 Target Full Sequence	3.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167100.1	ncRNA:20   UCUUAGAAACGGCUCACAGU   1   =||=|||||||||||||||* targets:17   GGAGUCUUUGCCGAGUGUCC   36 Target Full Sequence	2.0	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:20   UCUUAGAAACGGCUCACAGU   1   =||=|||||||||||||||* targets:17   GGAGUCUUUGCCGAGUGUCC   36 Target Full Sequence	2.0	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
HI406639.1	ncRNA:20   UCUUAGAAACGGCUCACAGU   1   =||=|||||||||||||||* targets:17   GGAGUCUUUGCCGAGUGUCC   36 Target Full Sequence	2.0	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
BT067215.1	ncRNA:20   UCUUAGAAACGGCUCACAGU   1   **|=|||||||||||||||| targets:1361   UUAGUCUUUGCCGAGUGUCA   1380 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT067215.1	ncRNA:20   UCUUA-GAAACGGCUCACAGU   1   ||*||-||||||||||||||| targets:1440   AGCAUACUUUGCCGAGUGUCA   1460 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:20   UCUUAGAAACGGCUCACAGU   1   **|=|||||||||||||||| targets:1498   UUAGUCUUUGCCGAGUGUCA   1517 Target Full Sequence	2.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:20   UCUUA-GAAACGGCUCACAGU   1   ||*||-||||||||||||||| targets:1577   AGCAUACUUUGCCGAGUGUCA   1597 Target Full Sequence	3.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:20   UCUUAGAAACGGCUCACAGU   1   **|=|||||||||||||||| targets:1498   UUAGUCUUUGCCGAGUGUCA   1517 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
BT064046.1	ncRNA:20   UCUUA-GAAACGGCUCACAGU   1   ||*||-||||||||||||||| targets:1577   AGCAUACUUUGCCGAGUGUCA   1597 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
HI406725.1	ncRNA:20   UCUUAGAAACGGCUCACAGU   1   =||=*||||||||||||||| targets:3   GGAGCCUUUGCCGAGUGUCA   22 Target Full Sequence	2.0	Sequence 4850 from Patent EP2074227	NA	coding protein	psRNATarget
JB167186.1	ncRNA:20   UCUUAGAAACGGCUCACAGU   1   =||=*||||||||||||||| targets:3   GGAGCCUUUGCCGAGUGUCA   22 Target Full Sequence	2.0	Sequence 4850 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238855.1	ncRNA:20   UCUUAGAAACGGCUCACAGU   1   =||=*||||||||||||||| targets:3   GGAGCCUUUGCCGAGUGUCA   22 Target Full Sequence	2.0	Sequence 4850 from Patent EP2985353	NA	coding protein	psRNATarget
EU962802.1	ncRNA:20   UCU-UAGAAACGGCUCACAGU   1   |||-||*|||||||||||||| targets:981   AGACAUGUUUGCCGAGUGUCA   1001 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT042352.1	ncRNA:20   UCUUAGAAACGGCUCACAGU   1   **=*|||||||||||||||| targets:1202   UAGCUCUUUGCCGAGUGUCA   1221 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:20   UCUUAGAAACGGCUCACAGU   1   **=*|||||||||||||||| targets:1252   UAGCUCUUUGCCGAGUGUCA   1271 Target Full Sequence	3.0	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget
EU949560.1	ncRNA:20   UCUUAGAAACGGCUCACAGU   1   |*||*||||||||||||||| targets:626   AAAAACUUUGCCGAGUGUCA   645 Target Full Sequence	2.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
EU942524.1	ncRNA:20   UCUUAGAAACGGCUCACAGU   1   |||*|||||||||||*|||| targets:527   AGACUCUUUGCCGAGCGUCA   546 Target Full Sequence	2.5	Zea mays clone 1513654 mRNA sequence	NA	coding protein	psRNATarget
XM_008658185.2	ncRNA:20   UCUUAGAAACGGCUCACAGU   1   *|==*||||||||||||||| targets:1564   CGGGCCUUUGCCGAGUGUCA   1583 Target Full Sequence	3.0	PREDICTED: Zea mays putative F-box/LRR-repeat protein At3g58880 (LOC103635804), mRNA	NA	coding protein	psRNATarget