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BaseInfo

ncRNA ID novel_zma_miR7676
Species Zea mays
Class miRNA
Genome position Chr10:80562497-80562605 [+]
Reference genome RefGen_v4
Source SRR3341905
Length 24
Mature sequence(if miRNA) 86 - AUAUGACAAGUUAGACACUGAACU - 109
Stem-loop(if miRNA) --   -        AUG           ----------------AU           CG CUG
  UUC GUGUCUAA   UGUCAUAUUUU                  CUAAGUUUAGU  U   A
  ||| ||||||||   |||||||||||                  |||||||||||  |   A
  AAG CACAGAUU   ACAGUAUAAAA                  GAUUCGAAUCA  A   U
UC   U        -GA           AAAAAAUUGAAAAAAAAU           AU AUU
Stem-loop sequence UUCGUGUCUAAAUGUGUCAUAUUUUAUCUAAGUUUAGUCGUCUGAAUUUAAUAACUAAGCUUAGUAAAAAAAAGUUAAAAAAAAAAUAUGACAAGUUAGACACUGAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT062066.1
ncRNA:24   UCAAGUCACAGAUUGAACAGUAUA   1
  =|||==*||*||||||||||||||
targets:1517   GGUUUGAUGGCUAACUUGUCAUAU   1540

3.0 Zea mays full-length cDNA clone ZM_BFb0211I24 mRNA, complete cds NA coding protein psRNATarget
NM_001175121.1
ncRNA:24   UCAAGUCACAGAUUGAACAGUAUA   1
  =|||==*||*||||||||||||||
targets:1932   GGUUUGAUGGCUAACUUGUCAUAU   1955

3.0 Zea mays UDP-glycosyltransferase 83A1 (LOC100382376), mRNA NA coding protein psRNATarget
BT064093.1
ncRNA:24   UCAAGUCACAGAUUGAACAGUAUA   1
  =|||==*||*||||||||||||||
targets:1932   GGUUUGAUGGCUAACUUGUCAUAU   1955

3.0 Zea mays full-length cDNA clone ZM_BFc0137J11 mRNA, complete cds NA coding protein psRNATarget