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BaseInfo

ncRNA ID	novel_zma_miR7674
Species	Zea mays
Class	miRNA
Genome position	Chr4:155468650-155468769 [-]
Reference genome	RefGen_v4
Source	SRR1745812;SRR5100255;SRR5105961
Length	24
Mature sequence(if miRNA)	97 - AGGACUGAUUUGGUGACCCGGGAU - 120
Stem-loop(if miRNA)	--   A             -CC           A     ---     C            UA   AGG CUGAUUUGGUGAC   GGGAUCACGGG GGAUU   GGGGA UGAGGGGGAAAU  G   ||| |||||||||||||   ||||||||||| |||||   ||||| ||||||||||||   UCC GACUAAACCACUG   CCCUAGUGCCC CCUAA   CCCCU ACUCUCCCUUUG  U AU   C             UUC           C     CUU     A            CU
Stem-loop sequence	AGGACUGAUUUGGUGACCCGGGAUCACGGGAGGAUUGGGGACUGAGGGGGAAAUUAGUUCGUUUCCCUCUCAAUCCCCUUCAAUCCCCCCGUGAUCCCCUUGUCACCAAAUCAGCCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ056613.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   |||||*|||||||||||||||||| targets:159   AUCCCCGGUCACCAAAUCAGUCCU   182 Target Full Sequence	1.0	TSA: Zea mays contig57735, mRNA sequence	NA	coding protein	psRNATarget
EU950017.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   ||||||||||||||||||||*||| targets:512   AUCCCGGGUCACCAAAUCAGCCCU   535 Target Full Sequence	1.5	Zea mays clone 457681 mRNA sequence	NA	coding protein	psRNATarget
BT087480.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   |||||*|||||||||||||||||| targets:866   AUCCCCGGUCACCAAAUCAGUCCU   889 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0089I03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196706.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   |||||*|||||||||||||||||| targets:866   AUCCCCGGUCACCAAAUCAGUCCU   889 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100502229), mRNA	NA	coding protein	psRNATarget
XM_020540504.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   ||||||||||||||||||||*||| targets:1877   AUCCCGGGUCACCAAAUCAGCCCU   1900 Target Full Sequence	1.5	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540503.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   ||||||||||||||||||||*||| targets:2315   AUCCCGGGUCACCAAAUCAGCCCU   2338 Target Full Sequence	1.5	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235575.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   |||||*||||||||||||||*||| targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84 Target Full Sequence	2.5	Sequence 1570 from Patent EP2985353	NA	coding protein	psRNATarget
JB163906.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   |||||*||||||||||||||*||| targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84 Target Full Sequence	2.5	Sequence 1570 from Patent EP2559767	NA	coding protein	psRNATarget
HI403445.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   |||||*||||||||||||||*||| targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84 Target Full Sequence	2.5	Sequence 1570 from Patent EP2074227	NA	coding protein	psRNATarget
HI403301.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   |||||*||||||||||||||*||| targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119 Target Full Sequence	2.5	Sequence 1426 from Patent EP2074227	NA	coding protein	psRNATarget
JB163762.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   |||||*||||||||||||||*||| targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119 Target Full Sequence	2.5	Sequence 1426 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235431.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   |||||*||||||||||||||*||| targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119 Target Full Sequence	2.5	Sequence 1426 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008671854.2	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   |||||*||||||||||||||*||| targets:70   AUCCCCGGUCACCAAAUCAGCCCU   93 Target Full Sequence	2.5	PREDICTED: Zea mays alpha-glucosidase 2 (LOC103647311), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU945757.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   *|==|*|||||||||||||||||| targets:69   UUUUCUGGUCACCAAAUCAGUCCU   92 Target Full Sequence	1.0	Zea mays clone 284734 mRNA sequence	NA	coding protein	psRNATarget
EU974244.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   |||*|*||||||||||||||*||| targets:490   AUCACCGGUCACCAAAUCAGCCCU   513 Target Full Sequence	2.5	Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds	NA	coding protein	psRNATarget
AY108273.1	ncRNA:24   UAGGGCCCAGUGGUUUAGUCAGGA   1   |||||***|||||||||||||||| targets:454   AUCCCUAUUCACCAAAUCAGUCCU   477 Target Full Sequence	3.0	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget