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BaseInfo

ncRNA ID	novel_zma_miR7668
Species	Zea mays
Class	miRNA
Genome position	Chr1:15198182-15198264 [+]
Reference genome	RefGen_v4
Source	SRR3341856
Length	21
Mature sequence(if miRNA)	63 - UCUUUGUCGAGUGUUUUUUUU - 83
Stem-loop(if miRNA)	--                 AA                  ACA   AGAAAACACUCGGCGAA  AGUUCUUUGUCGAGUGUU   A   |||||||||||||||||  ||||||||||||||||||   UUUUUUGUGAGCUGUUU  UCAAGAAACGGCUCACAA   A UU                 -C                  CAU
Stem-loop sequence	AGAAAACACUCGGCGAAAAAGUUCUUUGUCGAGUGUUACAAAUACAACACUCGGCAAAGAACUCUUUGUCGAGUGUUUUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008645203.2	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   ||||||||||||||=|||||| targets:4438   AAAAAAAACACUCGGCAAAGA   4458 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553261.1	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   ||||||||||||||=|||||| targets:4377   AAAAAAAACACUCGGCAAAGA   4397 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008645204.2	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   ||||||||||||||=|||||| targets:4370   AAAAAAAACACUCGGCAAAGA   4390 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   |=||||||||||||=|||||| targets:1966   AGAAAAAACACUCGGCAAAGA   1986 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   ||||||=|||||||=|||||| targets:2042   AAAAAAGACACUCGGCAAAGA   2062 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   =||||||=||||||=|||||| targets:2181   GAAAAAAGCACUCGGCAAAGA   2201 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   |=||||||||||||=|||||| targets:1966   AGAAAAAACACUCGGCAAAGA   1986 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
BT054268.1	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   ||||||=|||||||=|||||| targets:2042   AAAAAAGACACUCGGCAAAGA   2062 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
BT054268.1	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   =||||||=||||||=|||||| targets:2181   GAAAAAAGCACUCGGCAAAGA   2201 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   ||||||=|||||||=|||||| targets:23   AAAAAAGACACUCGGCAAAGA   43 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   =||||||=||||||=|||||| targets:162   GAAAAAAGCACUCGGCAAAGA   182 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   ||||||=|||||||=|||||| targets:23   AAAAAAGACACUCGGCAAAGA   43 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
BT055423.1	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   =||||||=||||||=|||||| targets:162   GAAAAAAGCACUCGGCAAAGA   182 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672266.2	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   *|||||||||||=|||||||| targets:627   CAAAAAAACACUUGACAAAGA   647 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008672266.2	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   |||||||||||||||||||** targets:547   AAAAAAAACACUCGACAAAAU   567 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008672265.2	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   *|||||||||||=|||||||| targets:375   CAAAAAAACACUUGACAAAGA   395 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672265.2	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   |||||||||||||||||||** targets:295   AAAAAAAACACUCGACAAAAU   315 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657421.2	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   ||||||||||||||*|||||| targets:56   AAAAAAAACACUCGUCAAAGA   76 Target Full Sequence	1.5	PREDICTED: Zea mays GDSL esterase/lipase At1g28590 (LOC103634831), mRNA	NA	coding protein	psRNATarget
EU952231.1	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   |*||||||||||||=|||||| targets:1735   ACAAAAAACACUCGGCAAAGA   1755 Target Full Sequence	1.5	Zea mays clone 1234152 mRNA sequence	NA	coding protein	psRNATarget
EU949560.1	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   =*|||=||||||||||||||| targets:556   GCAAAGAACACUCGACAAAGA   576 Target Full Sequence	1.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   |*||||=|||||||=|||||| targets:34   ACAAAAGACACUCGGCAAAGA   54 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008671736.2	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   |*||||||||||||=|||||* targets:271   ACAAAAAACACUCGGCAAAGC   291 Target Full Sequence	2.5	PREDICTED: Zea mays probable serine/threonine-protein kinase PBL28 (LOC103647166), mRNA	NA	coding protein	psRNATarget
BT084886.1	ncRNA:21   UUUUUUUUGUGAGCUGUUUCU   1   |*||||=||||||||||||*| targets:126   ACAAAAGACACUCGACAAAAA   146 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0200P15 mRNA, complete cds	NA	coding protein	psRNATarget