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BaseInfo

ncRNA ID novel_zma_miR7665
Species Zea mays
Class miRNA
Genome position Chr1:5593784-5593839 [+]
Reference genome RefGen_v4
Source SRR3341856
Length 21
Mature sequence(if miRNA) 36 - UUUGAUGGCAUUGAAGGGAUU - 56
Stem-loop(if miRNA) UUUAAA  UG   G   UG   GGAAG
      UU  AUG CAU  AAG     C
      ||  ||| |||  |||
      AA  UAC GUA  UUU     U
UUAGGG  GU   G   GU   AAAUA
Stem-loop sequence UUUAAAUUUGAUGGCAUUGAAGGGAAGCUAUAAAUUUUGAUGGCAUUGAAGGGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008661274.2
ncRNA:21   UUAGGGAAGUUACGGUAGUUU   1
  =*||==||||||||||||||=
targets:663   GUUCUUUUCAAUGCCAUCAAG   683

3.0 PREDICTED: Zea mays sodium/hydrogen exchanger 4 (LOC103638329), mRNA NA coding protein psRNATarget
AY110453.1
ncRNA:21   UUAGGGAAGUUACGGUAGUUU   1
  |**==||||||||||||||||
targets:466   ACCUUCUUCAAUGCCAUCAAA   486

3.0 Zea mays CL44079_1 mRNA sequence NA coding protein psRNATarget
BT068556.2
ncRNA:21   UUAGGGAAGUUACGGUAGUUU   1
  =*||||||||||*|||||||*
targets:5   GUUCCCUUCAAUACCAUCAAU   25

2.5 Zea mays full-length cDNA clone ZM_BFb0308B05 mRNA, complete cds NA coding protein psRNATarget