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BaseInfo

ncRNA ID novel_zma_miR7656
Species Zea mays
Class miRNA
Genome position Chr9:13039381-13039540 [+]
Reference genome RefGen_v4
Source SRR3341856
Length 21
Mature sequence(if miRNA) 1 - UUGGCCGCCGAAAAUAACUGC - 21
Stem-loop(if miRNA) --                  U                   ACAC                --G   C     A     UCU
  UUGGCCGCCGAAAAUAAC GCUUGUUUUCGGCGGCCUG    AGCCGCCGAAAAUAAC   UUA UUUCG CGGCU   G
  |||||||||||||||||| |||||||||||||||||||    ||||||||||||||||   ||| ||||| |||||
  GAUCGGCGGCUUUUAUUG CGAAUAAAAGCCGCCGGGC    UCGGCGGCUUUUAUUG   AAU AAAGC GCCGA   A
CC                  U                   CCGA                ACG   A     C     CAC
Stem-loop sequence UUGGCCGCCGAAAAUAACUGCUUGUUUUCGGCGGCCUGACACAGCCGCCGAAAAUAACGUUACUUUCGACGGCUUCUGACACAGCCGCCGAAAAUAAGCAGUUAUUUUCGGCGGCUAGCCCGGGCCGCCGAAAAUAAGCUGUUAUUUUCGGCGGCUAGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020545234.1
ncRNA:21   CGUCAAUAAAAGCCGCCGGUU   1
  |||*||||||||||||||||=
targets:6068   GCAAUUAUUUUCGGCGGCCAG   6088

2.0 PREDICTED: Zea mays ABC transporter I family member 1-like (LOC103642079), transcript variant X2, mRNA NA coding protein psRNATarget