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BaseInfo

ncRNA ID	novel_zma_miR7651
Species	Zea mays
Class	miRNA
Genome position	Chr9:106452481-106452564 [+]
Reference genome	RefGen_v4
Source	SRR3341856
Length	21
Mature sequence(if miRNA)	1 - AUGAAGGGGAUUGAGGGGGCU - 21
Stem-loop(if miRNA)	--   A  G               U      UC      CAA   AUG AG GGAUUGAGGGGGCUA AAUCCC  ACUAUU   A   ||| || ||||||||||||||| ||||||  ||||||   UAC UC CCUAACUCCCCCGGU UUAGGG  UGAUGA   A AU   C  A               C      GA      AUU
Stem-loop sequence	AUGAAGGGGAUUGAGGGGGCUAUAAUCCCUCACUAUUCAAAAUUAAGUAGUAGGGGAUUCUGGCCCCCUCAAUCCACUCCAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166488.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   ||||||||||||||||||||| targets:87   AGCCCCCUCAAUCCCCUUCAU   107 Target Full Sequence	0.0	Sequence 4152 from Patent EP2559767	NA	coding protein	psRNATarget
HI406027.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   ||||||||||||||||||||| targets:87   AGCCCCCUCAAUCCCCUUCAU   107 Target Full Sequence	0.0	Sequence 4152 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238157.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   ||||||||||||||||||||| targets:87   AGCCCCCUCAAUCCCCUUCAU   107 Target Full Sequence	0.0	Sequence 4152 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001174804.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   ||||||||||||||||||||| targets:2623   AGCCCCCUCAAUCCCCUUCAU   2643 Target Full Sequence	0.0	Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA	NA	coding protein	psRNATarget
BT062966.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   ||||||||||||||||||||| targets:2623   AGCCCCCUCAAUCCCCUUCAU   2643 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663899.2	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   ||||||||||||||||||||| targets:2711   AGCCCCCUCAAUCCCCUUCAU   2731 Target Full Sequence	0.0	PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY108800.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   |||||=|||||||||||*||| targets:781   AGCCCUCUCAAUCCCCUCCAU   801 Target Full Sequence	2.5	Zea mays PCO127746 mRNA sequence	NA	coding protein	psRNATarget
XM_008645760.2	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   |||||=|||||||||||*||| targets:1468   AGCCCUCUCAAUCCCCUCCAU   1488 Target Full Sequence	2.5	PREDICTED: Zea mays Ubiquitin carboxyl-terminal hydrolase 2 (pco127746), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   |||=|||||||||||||*||| targets:1673   AGCUCCCUCAAUCCCCUCCAU   1693 Target Full Sequence	2.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   |||||||||||||||||*||* targets:9   AGCCCCCUCAAUCCCCUCCAG   29 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   |*|=||||||||||||||||* targets:83   AUCUCCCUCAAUCCCCUUCAA   103 Target Full Sequence	2.0	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
JB163452.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   |*|=||||||||||||||||* targets:83   AUCUCCCUCAAUCCCCUUCAA   103 Target Full Sequence	2.0	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
HI402991.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   |*|=||||||||||||||||* targets:83   AUCUCCCUCAAUCCCCUUCAA   103 Target Full Sequence	2.0	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
JB170124.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   **||||||=|||||||||||* targets:66   UUCCCCCUUAAUCCCCUUCAA   86 Target Full Sequence	2.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   **||||||=|||||||||||* targets:66   UUCCCCCUUAAUCCCCUUCAA   86 Target Full Sequence	2.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
HI409663.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   **||||||=|||||||||||* targets:66   UUCCCCCUUAAUCCCCUUCAA   86 Target Full Sequence	2.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
EU961132.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   **||||||=|||||||||||* targets:820   UUCCCCCUUAAUCCCCUUCAA   840 Target Full Sequence	2.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   **||||||=|||||||||||* targets:859   UUCCCCCUUAAUCCCCUUCAA   879 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   **||||||=|||||||||||* targets:864   UUCCCCCUUAAUCCCCUUCAA   884 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   **||||||=|||||||||||* targets:864   UUCCCCCUUAAUCCCCUUCAA   884 Target Full Sequence	2.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
EZ077410.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   **||||||||||||*|||||| targets:61   UUCCCCCUCAAUCCACUUCAU   81 Target Full Sequence	1.5	TSA: Zea mays contig13047, mRNA sequence	NA	coding protein	psRNATarget
XM_020543383.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   **||||=|||||||||||||* targets:231   UUCCCCUUCAAUCCCCUUCAA   251 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103635833 (LOC103635833), mRNA	NA	coding protein	psRNATarget
EU954524.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   **||||||||||||*|||||| targets:61   UUCCCCCUCAAUCCACUUCAU   81 Target Full Sequence	1.5	Zea mays clone 1469353 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149312.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   **||||||||||||*|||||| targets:61   UUCCCCCUCAAUCCACUUCAU   81 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275152 (LOC100275152), mRNA	NA	coding protein	psRNATarget
XM_008681548.2	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   **||||||||||||*|||||| targets:69   UUCCCCCUCAAUCCACUUCAU   89 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103654710), mRNA	NA	coding protein	psRNATarget
JB163954.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   |*|||||||||||||||*||* targets:31   AUCCCCCUCAAUCCCCUCCAA   51 Target Full Sequence	2.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403493.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   |*|||||||||||||||*||* targets:31   AUCCCCCUCAAUCCCCUCCAA   51 Target Full Sequence	2.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   |*|||||||||||||||*||* targets:31   AUCCCCCUCAAUCCCCUCCAA   51 Target Full Sequence	2.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:21   UCGGGGGAGUUAGGGGAAGUA   1   |*||||||||||||||*|||* targets:1962   AACCCCCUCAAUCCCCCUCAA   1982 Target Full Sequence	2.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget