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BaseInfo

ncRNA ID	novel_zma_miR7649
Species	Zea mays
Class	miRNA
Genome position	Chr4:244758424-244758568 [+]
Reference genome	RefGen_v4
Source	SRR1745812
Length	21
Mature sequence(if miRNA)	125 - AUUUUGGGACAAAGGGAGUAU - 145
Stem-loop(if miRNA)	--       CC                              U             --UU   UUCAUUGUAUA   ACUCCCU  GUCCUAAAAUAUAAGUCAUUCCAAGAUUUU GGAGAGUCGAAGU    UAC           A   |||||||  |||||||||||||||||||||||||||||| |||||||||||||    |||           A   UGAGGGA  CAGGGUUUUAUAUUCAGUAAGGUUCUAAGA CCUCUCAGUUUCA    AGU           A UA       AA                              C             CAAA   UCAAACUGGUU
Stem-loop sequence	ACUCCCUCCGUCCUAAAAUAUAAGUCAUUCCAAGAUUUUUGGAGAGUCGAAGUUUUACUUCAUUGUAUAAAAUUGGUCAAACUUGAAAACACUUUGACUCUCCCAGAAUCUUGGAAUGACUUAUAUUUUGGGACAAAGGGAGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT061706.1	ncRNA:21   UAUGAGGGAAACAGGGUUUUA   1   ||||||||||||||||||||| targets:589   AUACUCCCUUUGUCCCAAAAU   609 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0176H22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008647879.2	ncRNA:21   UAUGAGGGAAACAGGGUUUUA   1   *||||||||*||||||||||| targets:1645   CUACUCCCUCUGUCCCAAAAU   1665 Target Full Sequence	1.5	PREDICTED: Zea mays DUF740 family protein (LOC103627578), mRNA	NA	coding protein	psRNATarget
BT067948.1	ncRNA:21   UAUGAGGGAAACAGGGUUUUA   1   *|||||*||*||||||||||| targets:1664   UUACUCACUCUGUCCCAAAAU   1684 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0011B23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176292.1	ncRNA:21   UAUGAGGGAAACAGGGUUUUA   1   *|||||*||*||||||||||| targets:1664   UUACUCACUCUGUCCCAAAAU   1684 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383647 (LOC100383647), mRNA	NA	coding protein	psRNATarget