Search result

BaseInfo

ncRNA ID	novel_zma_miR7648
Species	Zea mays
Class	miRNA
Genome position	Chr8:18840562-18840716 [-]
Reference genome	RefGen_v4
Source	SRR3341856;SRR3385660
Length	21
Mature sequence(if miRNA)	1 - UAAAUAUUAGUCACUAGAAAC - 21
Stem-loop(if miRNA)	--      G                CAU               U   GUAU       C                     UUCUAG GACUAAUAUUUAGUCC   CAUUUUAUUCCAUUU AGU    AAAUUGU AAAUAUAGAAACUAAAAUA   |||||| ||||||||||||||||   ||||||||||||||| |||    ||||||| ||||||||||||||||||G   AAGAUC CUGAUUAUAAAUCAGG   GUAAAAUAAGGUAAA UCA    UUUAACA UUUAUAUCUUUGGUUUUGA CA      A                AAU               U   AUGU       A
Stem-loop sequence	UUCUAGGGACUAAUAUUUAGUCCCAUCAUUUUAUUCCAUUUUAGUGUAUAAAUUGUCAAAUAUAGAAACUAAAAUAGAGUUUUGGUUUCUAUAUUUAACAAUUUUGUAACUUAAAUGGAAUAAAAUGUAAGGACUAAAUAUUAGUCACUAGAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163418.1	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||||||||||||||| targets:11   GUUUCUAGUGACUAAUAUUUA   31 Target Full Sequence	0.0	Sequence 1082 from Patent EP2559767	NA	coding protein	psRNATarget
JB163456.1	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||||||||||||||| targets:11   GUUUCUAGUGACUAAUAUUUA   31 Target Full Sequence	0.0	Sequence 1120 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235125.1	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||||||||||||||| targets:11   GUUUCUAGUGACUAAUAUUUA   31 Target Full Sequence	0.0	Sequence 1120 from Patent EP2985353	NA	coding protein	psRNATarget
HI402957.1	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||||||||||||||| targets:11   GUUUCUAGUGACUAAUAUUUA   31 Target Full Sequence	0.0	Sequence 1082 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235087.1	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||||||||||||||| targets:11   GUUUCUAGUGACUAAUAUUUA   31 Target Full Sequence	0.0	Sequence 1082 from Patent EP2985353	NA	coding protein	psRNATarget
HI402995.1	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||||||||||||||| targets:11   GUUUCUAGUGACUAAUAUUUA   31 Target Full Sequence	0.0	Sequence 1120 from Patent EP2074227	NA	coding protein	psRNATarget
HI403095.1	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||||||||||||||| targets:11   GUUUCUAGUGACUAAUAUUUA   31 Target Full Sequence	0.0	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||||||||||||||| targets:11   GUUUCUAGUGACUAAUAUUUA   31 Target Full Sequence	0.0	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
JB163556.1	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||||||||||||||| targets:11   GUUUCUAGUGACUAAUAUUUA   31 Target Full Sequence	0.0	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
EU950874.1	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||||||||||=|||| targets:809   GUUUCUAGUGACUAAUGUUUA   829 Target Full Sequence	1.5	Zea mays clone 645234 mRNA sequence	NA	coding protein	psRNATarget
BT053999.2	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||*|||||||||||| targets:1941   GUUUCUAGGGACUAAUAUUUA   1961 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152323.1	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||*|||||||||||| targets:1941   GUUUCUAGGGACUAAUAUUUA   1961 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA	NA	coding protein	psRNATarget
NM_001153051.1	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||*|||||||||||| targets:794   GUUUCUAGGGACUAAUAUUUA   814 Target Full Sequence	1.5	Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA	NA	coding protein	psRNATarget
BT055601.1	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||*|||||||||||| targets:794   GUUUCUAGGGACUAAUAUUUA   814 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds	NA	coding protein	psRNATarget
BT065747.2	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||*|||||||||||| targets:771   GUUUCUAGGGACUAAUAUUUA   791 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||||||||||||||*|||| targets:51   GUUUCUAGUGACUAAUUUUUA   71 Target Full Sequence	1.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
XM_008654984.2	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   ||||*|||*|||||||||||| targets:2913   GUUUGUAGGGACUAAUAUUUA   2933 Target Full Sequence	2.5	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
XM_008656457.2	ncRNA:21   CAAAGAUCACUGAUUAUAAAU   1   |||||||**|||||||||||| targets:1652   GUUUCUAAGGACUAAUAUUUA   1672 Target Full Sequence	2.5	PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X5, mRNA	NA	coding protein	psRNATarget