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BaseInfo

ncRNA ID	novel_zma_miR7647
Species	Zea mays
Class	miRNA
Genome position	Chr1:11436764-11436887 [-]
Reference genome	RefGen_v4
Source	SRR3341856;SRR5105959;SRR5105963
Length	21
Mature sequence(if miRNA)	1 - UCCCAUGCAACCAAACAAGCC - 21
Stem-loop(if miRNA)	--          C         A                  A         A  C  U   U   CUUGUUUGGU GCAUGGGGA UGGAGGGGAUUGAGGGGC UAUAAUCCC UG UG UCA U   |||||||||| ||||||||| |||||||||||||||||| ||||||||| || || |||   GAACAAACCA CGUACCCUU ACCUCUCCUAACUCCCCG AUAUUAGGG AC AU AGU U CC          A         A                  G         A  A  C   U
Stem-loop sequence	CUUGUUUGGUCGCAUGGGGAAUGGAGGGGAUUGAGGGGCAUAUAAUCCCAUGCUGUUCAUUUUUGACUAACAAGGGAUUAUAGGCCCCUCAAUCCUCUCCAAUUCCCAUGCAACCAAACAAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020549636.1	ncRNA:21   CCGAACAAACCAACGUACCCU   1   |*||||||||||||||||||= targets:1552   GCCUUGUUUGGUUGCAUGGGG   1572 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100277552), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ091126.1	ncRNA:21   CCGAACAAACCAACGUACCCU   1   ||||*||||||*||||||||| targets:79   GGCUGGUUUGGAUGCAUGGGA   99 Target Full Sequence	2.5	TSA: Zea mays contig26773, mRNA sequence	NA	coding protein	psRNATarget
AY105187.1	ncRNA:21   CCGAACAAACCAACGUACCCU   1   ||*||||||||||*||||||| targets:276   GGGUUGUUUGGUUUCAUGGGA   296 Target Full Sequence	2.5	Zea mays PCO067049 mRNA sequence	NA	coding protein	psRNATarget
EU969631.1	ncRNA:21   CCGAACAAACCAACGUACCCU   1   ||*||||||||||*||||||| targets:618   GGGUUGUUUGGUUUCAUGGGA   638 Target Full Sequence	2.5	Zea mays clone 333378 BCL-2 binding anthanogene-1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157668.1	ncRNA:21   CCGAACAAACCAACGUACCCU   1   ||*||||||||||*||||||| targets:618   GGGUUGUUUGGUUUCAUGGGA   638 Target Full Sequence	2.5	Zea mays BCL-2 binding anthanogene-1 (pco067049), mRNA	NA	coding protein	psRNATarget
EU947016.1	ncRNA:21   CCGAACAAACCAACGUACCCU   1   ||*||||||||||*||||||| targets:275   GGGUUGUUUGGUUUCAUGGGA   295 Target Full Sequence	2.5	Zea mays clone 326144 mRNA sequence	NA	coding protein	psRNATarget
NM_001348000.1	ncRNA:21   CCGAACAAACCAACGUACCCU   1   *||||||||*||||||||||* targets:2772   UGCUUGUUUUGUUGCAUGGGU   2792 Target Full Sequence	2.5	Zea mays BZIP transcription factor (LOC100275115), mRNA	NA	coding protein	psRNATarget
XM_008682061.2	ncRNA:21   CCGAACAAACCAACGUACCCU   1   **|*||||*|||||||||||| targets:72   ACCGUGUUCGGUUGCAUGGGA   92 Target Full Sequence	2.5	PREDICTED: Zea mays cation cation antiporter (LOC100285634), transcript variant X1, mRNA	NA	coding protein	psRNATarget