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BaseInfo

ncRNA ID	novel_zma_miR7619
Species	Zea mays
Class	miRNA
Genome position	Chr5:220205098-220205212 [-]
Reference genome	RefGen_v4
Source	SRR3341856;SRR4237222
Length	24
Mature sequence(if miRNA)	1 - AUAUGGAUUGGAAAUAACCGAACA - 24
Stem-loop(if miRNA)	--         ACC          G            UUUCAAUCCCCAAUAAGUCAA   UUCGGUUAU   CCAAUCCAUA GGAUUGAGGGGG                     A   |||||||||   |||||||||| ||||||||||||   AAGCCAAUA   GGUUAGGUAU CCUAACUUCCCC                     A AC         -AA          A            UAACUAUGCCUAACCUCCCCU
Stem-loop sequence	UUCGGUUAUACCCCAAUCCAUAGGGAUUGAGGGGGUUUCAAUCCCCAAUAAGUCAAAAUCCCCUCCAAUCCGUAUCAAUCCCCUUCAAUCCAUAUGGAUUGGAAAUAACCGAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008680349.2	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||=|||||||||| targets:1884   UGUUCGGUUAUUUUCAAUCCAUAU   1907 Target Full Sequence	1.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068463.1	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||=|||||||||| targets:1143   UGUUCGGUUAUUUUCAAUCCAUAU   1166 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT037847.1	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||=|||||||||| targets:1210   UGUUCGGUUAUUUUCAAUCCAUAU   1233 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0199C24 mRNA, complete cds	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||=|||||||||| targets:380   UGUUCGGUUAUUUUCAAUCCAUAU   403 Target Full Sequence	1.5	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||=|||||||||| targets:764   UGUUCGGUUAUUUUCAAUCCAUAU   787 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
DQ246079.1	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||=|||||||||| targets:1067   UGUUCGGUUAUUUUCAAUCCAUAU   1090 Target Full Sequence	1.5	Zea mays clone 14671 mRNA sequence	NA	coding protein	psRNATarget
EU967708.1	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||=|||||||||| targets:1026   UGUUCGGUUAUUUUCAAUCCAUAU   1049 Target Full Sequence	1.5	Zea mays clone 305479 RER1A protein mRNA, complete cds	NA	coding protein	psRNATarget
EU972032.1	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||=|||||||||| targets:871   UGUUCGGUUAUUUUCAAUCCAUAU   894 Target Full Sequence	1.5	Zea mays clone 373636 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151506.1	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||=|||||||||| targets:871   UGUUCGGUUAUUUUCAAUCCAUAU   894 Target Full Sequence	1.5	Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA	NA	coding protein	psRNATarget
BT068594.1	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||=|||||||||| targets:841   UGUUCGGUUAUUUUCAAUCCAUAU   864 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds	NA	coding protein	psRNATarget
AY104043.1	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||=|||||||||| targets:844   UGUUCGGUUAUUUUCAAUCCAUAU   867 Target Full Sequence	1.5	Zea mays PCO145885 mRNA sequence	NA	coding protein	psRNATarget
EU951312.1	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||=|||||||||| targets:304   UGUUCGGUUAUUUUCAAUCCAUAU   327 Target Full Sequence	1.5	Zea mays clone 695515 mRNA sequence	NA	coding protein	psRNATarget
EZ101759.1	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||=|||||||||| targets:18   UGUUCGGUUAUUUUCAAUCCAUAU   41 Target Full Sequence	1.5	TSA: Zea mays contig37415, mRNA sequence	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   ||||||||||||||||||*||||| targets:3356   UGUUCGGUUAUUUCCAAUACAUAU   3379 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   ||||||||||||||||||*||||| targets:3325   UGUUCGGUUAUUUCCAAUACAUAU   3348 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   ||||||||||||||||||*||||| targets:3312   UGUUCGGUUAUUUCCAAUACAUAU   3335 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT035012.1	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |*|||||||||||=|||||||||| targets:1523   UAUUCGGUUAUUUUCAAUCCAUAU   1546 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:24   ACAAGCCAAUAAAGGUUAGGUAUA   1   |*|||||||||||=|||||||||| targets:1523   UAUUCGGUUAUUUUCAAUCCAUAU   1546 Target Full Sequence	1.5	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget