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BaseInfo

ncRNA ID	novel_zma_miR7618
Species	Zea mays
Class	miRNA
Genome position	Chr10:3616054-3616167 [-]
Reference genome	RefGen_v4
Source	SRR3341856;SRR5100248
Length	21
Mature sequence(if miRNA)	94 - UCAAAAUCCAACAGUGACUGC - 114
Stem-loop(if miRNA)	--               G            -GG    AGAGG    A  U  AA      UCAAAAUCCAACAGU ACUGCUAUUUUA   UGGA     UUAA UG AA  UAGC   ||||||||||||||| ||||||||||||   ||||     |||| || ||  |||U   AGUUUUAGGUUGUCA UGACGAUAAAAU   ACUU     GGUU AC UU  AUCA UU               G            AUA    GGGAA    G  U  GG
Stem-loop sequence	UCAAAAUCCAACAGUGACUGCUAUUUUAGGUGGAAGAGGUUAAAUGUAAAAUAGCUACUAGGUUUCAGUUGGAAGGGUUCAAUAUAAAAUAGCAGUGACUGUUGGAUUUUGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ063235.1	ncRNA:21   CGUCAGUGACAACCUAAAACU   1   ***|||=|||||||||||||| targets:29   UGUGUCGCUGUUGGAUUUUGA   49 Target Full Sequence	2.0	TSA: Zea mays contig64357, mRNA sequence	NA	coding protein	psRNATarget
EU949122.1	ncRNA:21   CGUCAGUGACAACCUAAAACU   1   ***|||=|||||||||||||| targets:106   UGUGUCGCUGUUGGAUUUUGA   126 Target Full Sequence	2.0	Zea mays clone 396592 mRNA sequence	NA	coding protein	psRNATarget
AY109161.1	ncRNA:21   CGUCAGUGACAACCUAAAACU   1   ***|||=|||||||||||||| targets:518   UGUGUCGCUGUUGGAUUUUGA   538 Target Full Sequence	2.0	Zea mays PCO146233 mRNA sequence	NA	coding protein	psRNATarget
EU953550.1	ncRNA:21   CGUCAGUGACAACCUAAAACU   1   |=|*|=|=||||||||||||| targets:820   GUAUUUAUUGUUGGAUUUUGA   840 Target Full Sequence	3.0	Zea mays clone 1433848 mRNA sequence	NA	coding protein	psRNATarget
BT061938.1	ncRNA:21   CGUCAGUGACAACCUAAAACU   1   ***|||=|||||||||||||| targets:1937   UGUGUCGCUGUUGGAUUUUGA   1957 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0199H20 mRNA, complete cds	NA	coding protein	psRNATarget
BT062883.1	ncRNA:21   CGUCAGUGACAACCUAAAACU   1   ***|||=|||||||||||||| targets:1950   UGUGUCGCUGUUGGAUUUUGA   1970 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0003O19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174777.1	ncRNA:21   CGUCAGUGACAACCUAAAACU   1   ***|||=|||||||||||||| targets:1950   UGUGUCGCUGUUGGAUUUUGA   1970 Target Full Sequence	2.0	Zea mays putative inactive purple acid phosphatase 1 (LOC100382011), mRNA	NA	coding protein	psRNATarget
XM_008660595.2	ncRNA:21   CGUCAGUGACAACCUAAAACU   1   ***|||=|||||||||||||| targets:2017   UGUGUCGCUGUUGGAUUUUGA   2037 Target Full Sequence	2.0	PREDICTED: Zea mays putative inactive purple acid phosphatase 1 (LOC100382011), transcript variant X1, mRNA	NA	coding protein	psRNATarget