Search result

BaseInfo

ncRNA ID novel_zma_miR7617
Species Zea mays
Class miRNA
Genome position Chr5:223280624-223280670 [-]
Reference genome RefGen_v4
Source SRR3341856
Length 21
Mature sequence(if miRNA) 27 - UUUGAUGGCAUUGAAGGGAUU - 47
Stem-loop(if miRNA) --  UG   G        -GG  U
  UU  AUG CAUUGAAG   AU G
  ||  ||| ||||||||   ||
  AA  UAC GUAGCUUU   UA A
GG  GU   G        GAA  U
Stem-loop sequence UUUGAUGGCAUUGAAGGGAUUGAUAUAAGUUUCGAUGGCAUUGAAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008661274.2
ncRNA:21   UUAGGGAAGUUACGGUAGUUU   1
  =*||==||||||||||||||=
targets:663   GUUCUUUUCAAUGCCAUCAAG   683

3.0 PREDICTED: Zea mays sodium/hydrogen exchanger 4 (LOC103638329), mRNA NA coding protein psRNATarget
AY110453.1
ncRNA:21   UUAGGGAAGUUACGGUAGUUU   1
  |**==||||||||||||||||
targets:466   ACCUUCUUCAAUGCCAUCAAA   486

3.0 Zea mays CL44079_1 mRNA sequence NA coding protein psRNATarget
BT068556.2
ncRNA:21   UUAGGGAAGUUACGGUAGUUU   1
  =*||||||||||*|||||||*
targets:5   GUUCCCUUCAAUACCAUCAAU   25

2.5 Zea mays full-length cDNA clone ZM_BFb0308B05 mRNA, complete cds NA coding protein psRNATarget