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BaseInfo

ncRNA ID novel_zma_miR7614
Species Zea mays
Class miRNA
Genome position Chr5:204808901-204809015 [+]
Reference genome RefGen_v4
Source SRR3341856
Length 24
Mature sequence(if miRNA) 92 - AAAAUAGAAUAAAAUCUAGGGACU - 115
Stem-loop(if miRNA) --     UC         CU       GUAU                          
  UCCCU  AUUUUAUUC  UUUUAGU    AAAUUGCUAAAUAUAGAAACUAAAAUA
  |||||  |||||||||  |||||||    ||||||||||||||||||||||||||A
  AGGGA  UAAAAUAAG  AAAAUCA    UUUAAUGGUUUAUAUCUUUGAUUUUGA
UC     UC         AU       AGGU                          
Stem-loop sequence UCCCUUCAUUUUAUUCCUUUUUAGUGUAUAAAUUGCUAAAUAUAGAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUGGUAAUUUUGGAACUAAAAUAGAAUAAAAUCUAGGGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001112512.2
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||||*|||||||||||||||
targets:1571   AGUCCCUACAUUUUAUUCUAUUUU   1594

1.0 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
NM_001112512.2
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  |||||||**|||||||||||||||
targets:1668   AGUCCCUUCAUUUUAUUCUAUUUU   1691

2.0 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
XM_008667360.2
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||||*|||||||||||||||
targets:1068   AGUCCCUAUAUUUUAUUCUAUUUU   1091

1.0 PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA NA coding protein psRNATarget
EZ052166.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||||||||||||||*|||||
targets:779   AGUCCCUAGAUUUUAUUCCAUUUU   802

1.5 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
EZ060524.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||||*|||||||||||||||
targets:71   AGUCCCUACAUUUUAUUCUAUUUU   94

1.0 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
EU956677.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||||*||||||||=||||||
targets:2039   AGUCCCUACAUUUUAUUUUAUUUU   2062

2.5 Zea mays clone 1570443 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020546793.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||||*|||||||||||*|||
targets:3593   AGUCCCUACAUUUUAUUCUAAUUU   3616

2.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546794.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||||*|||||||||||*|||
targets:3556   AGUCCCUACAUUUUAUUCUAAUUU   3579

2.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546795.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||||*|||||||||||*|||
targets:3506   AGUCCCUACAUUUUAUUCUAAUUU   3529

2.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546796.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||||*|||||||||||*|||
targets:3431   AGUCCCUACAUUUUAUUCUAAUUU   3454

2.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||||*|||||||||*|||||
targets:999   AGUCCCUACAUUUUAUUCCAUUUU   1022

2.5 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  |||||||**|||||||||||||||
targets:838   AGUCCCUUCAUUUUAUUCUAUUUU   861

2.0 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
BT018349.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||||*|||||||||||*|||
targets:587   AGUCCCUACAUUUUAUUCUAAUUU   610

2.5 Zea mays clone EL01T0403E10.c mRNA sequence NA coding protein psRNATarget
EU941753.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||||*|||||||||||*|||
targets:32   AGUCCCUACAUUUUAUUCUAAUUU   55

2.5 Zea mays clone 1469712 mRNA sequence NA coding protein psRNATarget
LQ235185.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  |||||||**|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52

2.0 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
HI403055.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  |||||||**|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52

2.0 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
JB163516.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  |||||||**|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52

2.0 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
JB163511.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  |||||||**|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52

2.0 Sequence 1175 from Patent EP2559767 NA coding protein psRNATarget
HI403050.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  |||||||**|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52

2.0 Sequence 1175 from Patent EP2074227 NA coding protein psRNATarget
LQ235180.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  |||||||**|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52

2.0 Sequence 1175 from Patent EP2985353 NA coding protein psRNATarget
BT036582.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||=|||*|||||||||*|||||
targets:842   AGUCUCUACAUUUUAUUCCAUUUU   865

2.5 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||=|||*|||||||||*|||||
targets:842   AGUCUCUACAUUUUAUUCCAUUUU   865

2.5 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  |||=||||*|||||||||*|||||
targets:579   AGUUCCUACAUUUUAUUCCAUUUU   602

2.5 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
BT038994.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  |||==||**|||||||||||||||
targets:1105   AGUUUCUCUAUUUUAUUCUAUUUU   1128

2.0 Zea mays full-length cDNA clone ZM_BFb0348D04 mRNA, complete cds NA coding protein psRNATarget
NM_001147048.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  |||==||**|||||||||||||||
targets:1105   AGUUUCUCUAUUUUAUUCUAUUUU   1128

2.0 Zea mays Nudix hydrolase 23 chloroplastic (LOC100272585), mRNA NA coding protein psRNATarget
XM_020547858.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||***|||||||||||||||
targets:1568   AGUCCCAUCAUUUUAUUCUAUUUU   1591

3.0 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
HI403040.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||***|||||||||||||||
targets:31   AGUCCCAUCAUUUUAUUCUAUUUU   54

3.0 Sequence 1165 from Patent EP2074227 NA coding protein psRNATarget
LQ235170.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||***|||||||||||||||
targets:31   AGUCCCAUCAUUUUAUUCUAUUUU   54

3.0 Sequence 1165 from Patent EP2985353 NA coding protein psRNATarget
JB163501.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  ||||||***|||||||||||||||
targets:31   AGUCCCAUCAUUUUAUUCUAUUUU   54

3.0 Sequence 1165 from Patent EP2559767 NA coding protein psRNATarget
XM_008657966.2
ncRNA:20   GGAUCUAAAAUAAGAUAAAA   1
  ||||*|||||||||||||||
targets:1   CCUACAUUUUAUUCUAUUUU   20

1.0 PREDICTED: Zea mays uncharacterized LOC103635535 (LOC103635535), transcript variant X1, mRNA NA coding protein psRNATarget
EU947809.1
ncRNA:24   UCAGGGAUCUAAAAUAAGAUAAAA   1
  |***|*||||||||=|||||||||
targets:453   AUGACAUAGAUUUUGUUCUAUUUU   476

2.5 Zea mays clone 360449 mRNA sequence NA coding protein psRNATarget
BT056017.1
ncRNA:24   UCAG-GGAUCUAAAAUAAGAUAAAA   1
  **||-=|||||||||*||||||||*
targets:175   CAUCGUCUAGAUUUUUUUCUAUUUG   199

2.5 Zea mays full-length cDNA clone ZM_BFc0130K21 mRNA, complete cds NA coding protein psRNATarget
NM_001153253.1
ncRNA:24   UCAG-GGAUCUAAAAUAAGAUAAAA   1
  **||-=|||||||||*||||||||*
targets:175   CAUCGUCUAGAUUUUUUUCUAUUUG   199

2.5 Zea mays uncharacterized LOC100280327 (LOC100280327), mRNA NA coding protein psRNATarget
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