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BaseInfo

ncRNA ID novel_zma_miR7584
Species Zea mays
Class miRNA
Genome position Chr3:190258399-190258486 [+]
Reference genome RefGen_v4
Source SRR3341856
Length 21
Mature sequence(if miRNA) 1 - AUAUGGAUUGAGGGGGAUUGU - 21
Stem-loop(if miRNA) --                    --------      UUUUAAUCC  A
  AUAUGGAUUGAGGGGGAUUG        UGGGGG         CU G
  ||||||||||||||||||||        ||||||         ||
  UAUACCUAACUUCCCCUAAC        ACCCUC         GA C
GG                    UAUGCCUA      CUUAAAACC  A
Stem-loop sequence AUAUGGAUUGAGGGGGAUUGUGGGGGUUUUAAUCCCUAGCAAGCCAAAAUUCCUCCCAAUCCGUAUCAAUCCCCUUCAAUCCAUAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008680349.2
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||||||||||||||||
targets:1969   UCAAUCCCCCUCAAUCCAUAU   1989

0.0 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
EU955707.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||||||||||||||||
targets:606   UCAAUCCCCCUCAAUCCAUAU   626

0.0 Zea mays clone 1543022 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT061531.2
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||||||||||||||||
targets:849   UCAAUCCCCCUCAAUCCAUAU   869

0.0 Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds NA coding protein psRNATarget
LQ241947.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||||||||||||||||
targets:80   UCAAUCCCCCUCAAUCCAUAU   100

0.0 Sequence 7942 from Patent EP2985353 NA coding protein psRNATarget
HI409817.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||||||||||||||||
targets:80   UCAAUCCCCCUCAAUCCAUAU   100

0.0 Sequence 7942 from Patent EP2074227 NA coding protein psRNATarget
JB170278.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||||||||||||||||
targets:80   UCAAUCCCCCUCAAUCCAUAU   100

0.0 Sequence 7942 from Patent EP2559767 NA coding protein psRNATarget
EU948993.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  |||||=|||||||=|||||||
targets:595   ACAAUUCCCCUCAGUCCAUAU   615

2.5 Zea mays clone 393064 mRNA sequence NA coding protein psRNATarget
BT055069.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||||=|||||||||||
targets:976   UCAAUCCCCUUCAAUCCAUAU   996

1.5 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
BT041454.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||||=|||||||||||
targets:1497   UCAAUCCCCUUCAAUCCAUAU   1517

1.5 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
NM_001148011.2
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||||=|||||||||||
targets:1497   UCAAUCCCCUUCAAUCCAUAU   1517

1.5 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
AY105910.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||||=|||||||||||
targets:1483   UCAAUCCCCUUCAAUCCAUAU   1503

1.5 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
BT040193.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||||=|||||||||||
targets:1465   UCAAUCCCCUUCAAUCCAUAU   1485

1.5 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
BT064472.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||||=|||||||||||
targets:1421   UCAAUCCCCUUCAAUCCAUAU   1441

1.5 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
EU962730.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *|||||||=||||||||||||
targets:1073   UCAAUCCCUCUCAAUCCAUAU   1093

1.5 Zea mays clone 245054 mRNA sequence NA coding protein psRNATarget
EU972313.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *|=||||||||||||||||||
targets:30   UCGAUCCCCCUCAAUCCAUAU   50

1.0 Zea mays clone 379548 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
HI408824.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||=|||||||||||||
targets:81   UCAAUCCUCCUCAAUCCAUAU   101

1.0 Sequence 6949 from Patent EP2074227 NA coding protein psRNATarget
JB169285.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||=|||||||||||||
targets:81   UCAAUCCUCCUCAAUCCAUAU   101

1.0 Sequence 6949 from Patent EP2559767 NA coding protein psRNATarget
LQ240954.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||=|||||||||||||
targets:81   UCAAUCCUCCUCAAUCCAUAU   101

1.0 Sequence 6949 from Patent EP2985353 NA coding protein psRNATarget
BT068463.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  **|||||||||||||||||||
targets:1209   UGAAUCCCCCUCAAUCCAUAU   1229

0.0 Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds NA coding protein psRNATarget
NM_001151506.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  **|||||||||||||||||||
targets:937   UGAAUCCCCCUCAAUCCAUAU   957

0.0 Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA NA coding protein psRNATarget
EU972032.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  **|||||||||||||||||||
targets:937   UGAAUCCCCCUCAAUCCAUAU   957

0.0 Zea mays clone 373636 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT068594.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  **|||||||||||||||||||
targets:907   UGAAUCCCCCUCAAUCCAUAU   927

0.0 Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds NA coding protein psRNATarget
AY104043.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  **|||||||||||||||||||
targets:910   UGAAUCCCCCUCAAUCCAUAU   930

0.0 Zea mays PCO145885 mRNA sequence NA coding protein psRNATarget
EU951312.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  **|||||||||||||||||||
targets:370   UGAAUCCCCCUCAAUCCAUAU   390

0.0 Zea mays clone 695515 mRNA sequence NA coding protein psRNATarget
XM_008654469.2
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *|||||=||=|||||||||||
targets:3120   UCAAUCUCCUUCAAUCCAUAU   3140

2.5 PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA NA coding protein psRNATarget
XM_008658331.2
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *|=||||||=|||||||||||
targets:1698   UCGAUCCCCUUCAAUCCAUAU   1718

2.5 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
BT018999.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *=||||||=||||||||||||
targets:464   CUAAUCCCUCUCAAUCCAUAU   484

1.5 Zea mays clone Contig487.F mRNA sequence NA coding protein psRNATarget
XM_020547439.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||||||||||||*|||
targets:3927   CCAAUCCCCCUCAAUCCCUAU   3947

1.5 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001138093.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *|||||*||||||||||||||
targets:1608   UCAAUCACCCUCAAUCCAUAU   1628

1.0 Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA NA coding protein psRNATarget
BT035012.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *|||||*||||||||||||||
targets:1608   UCAAUCACCCUCAAUCCAUAU   1628

1.0 Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds NA coding protein psRNATarget
NM_001148918.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *|||||||*||||||||||||
targets:1469   CCAAUCCCACUCAAUCCAUAU   1489

1.5 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
BT043378.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *|||||||*||||||||||||
targets:1469   CCAAUCCCACUCAAUCCAUAU   1489

1.5 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
EZ083462.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *||||||||||||||||*|||
targets:39   CCAAUCCCCCUCAAUCCCUAU   59

1.5 TSA: Zea mays contig19106, mRNA sequence NA coding protein psRNATarget
JB163466.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *|||||||*||||||||||||
targets:101   CCAAUCCCACUCAAUCCAUAU   121

1.5 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
HI403005.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *|||||||*||||||||||||
targets:101   CCAAUCCCACUCAAUCCAUAU   121

1.5 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
LQ235135.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *|||||||*||||||||||||
targets:101   CCAAUCCCACUCAAUCCAUAU   121

1.5 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
NM_001156482.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  |*||||=||||||||||=|||
targets:868   AAAAUCUCCCUCAAUCCGUAU   888

2.5 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
EU965203.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  |*||||=||||||||||=|||
targets:868   AAAAUCUCCCUCAAUCCGUAU   888

2.5 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
NM_001348011.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  |*||||=|=||||||||||||
targets:425   AAAAUCUCUCUCAAUCCAUAU   445

2.5 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
XM_020537815.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *=|||||||||||||||*|||
targets:2603   UUAAUCCCCCUCAAUCCCUAU   2623

1.5 PREDICTED: Zea mays uncharacterized protein DDB_G0284459 (LOC103627942), mRNA NA coding protein psRNATarget
XM_008669549.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *=||||||*||||||||||||
targets:2085   CUAAUCCCACUCAAUCCAUAU   2105

1.5 PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA NA coding protein psRNATarget
BT042044.2
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *=||||||*||||||||||||
targets:1368   CUAAUCCCACUCAAUCCAUAU   1388

1.5 Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds NA coding protein psRNATarget
JB167799.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *=|||||||||||||||*|||
targets:73   UUAAUCCCCCUCAAUCCCUAU   93

1.5 Sequence 5463 from Patent EP2559767 NA coding protein psRNATarget
LQ239468.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *=|||||||||||||||*|||
targets:73   UUAAUCCCCCUCAAUCCCUAU   93

1.5 Sequence 5463 from Patent EP2985353 NA coding protein psRNATarget
HI407338.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *=|||||||||||||||*|||
targets:73   UUAAUCCCCCUCAAUCCCUAU   93

1.5 Sequence 5463 from Patent EP2074227 NA coding protein psRNATarget
EZ101759.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  **||*||||||||||||||||
targets:93   UAAAACCCCCUCAAUCCAUAU   113

1.0 TSA: Zea mays contig37415, mRNA sequence NA coding protein psRNATarget
XM_008653299.2
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *==||||||||||||||*|||
targets:820   UUGAUCCCCCUCAAUCCCUAU   840

2.5 PREDICTED: Zea mays protein UXT (LOC100284726), transcript variant X1, mRNA NA coding protein psRNATarget
EU973948.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *=|||||*|||||||||||=|
targets:892   CUAAUCCACCUCAAUCCAUGU   912

2.5 Zea mays clone 424847 plasma membrane associated protein mRNA, complete cds NA coding protein psRNATarget
NM_001158675.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  *=|||||*|||||||||||=|
targets:892   CUAAUCCACCUCAAUCCAUGU   912

2.5 Zea mays plasma membrane associated protein (LOC100285785), mRNA NA coding protein psRNATarget
EU959771.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  **||*|||=||||||||||||
targets:1305   UAAAACCCUCUCAAUCCAUAU   1325

2.5 Zea mays clone 219936 mRNA sequence NA coding protein psRNATarget
NM_001327795.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  **||*|||=||||||||||||
targets:1226   UAAAACCCUCUCAAUCCAUAU   1246

2.5 Zea mays peroxisomal 2,4-dienoyl-CoA reductase-like (LOC103504713), mRNA NA coding protein psRNATarget
BT085188.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  **||*|||=||||||||||||
targets:1350   UAAAACCCUCUCAAUCCAUAU   1370

2.5 Zea mays full-length cDNA clone ZM_BFb0324P02 mRNA, complete cds NA coding protein psRNATarget
BT064813.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  **||*|||=||||||||||||
targets:1194   UAAAACCCUCUCAAUCCAUAU   1214

2.5 Zea mays full-length cDNA clone ZM_BFb0171N23 mRNA, complete cds NA coding protein psRNATarget
BT041645.1
ncRNA:21   UGUUAGGGGGAGUUAGGUAUA   1
  **||*|||=||||||||||||
targets:1309   UAAAACCCUCUCAAUCCAUAU   1329

2.5 Zea mays full-length cDNA clone ZM_BFb0022N16 mRNA, complete cds NA coding protein psRNATarget
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