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BaseInfo

ncRNA ID novel_zma_miR7580
Species Zea mays
Class miRNA
Genome position Chr3:133857807-133857918 [+]
Reference genome RefGen_v4
Source SRR3341856
Length 21
Mature sequence(if miRNA) 92 - AACAAAUUGGUUGGGCUGCGG - 112
Stem-loop(if miRNA) --  U                           A         CUUU    U   - AA
  GC GUCCAAUCGAUUUGUUGGUUUUAACUG CUUUGUCAC    UUAG UUG C  A
  || ||||||||||||||||||||||||||| |||||||||    |||| ||| |  A
  CG CGGGUUGGUUAAACAACCAAAAUUGAC GAAACAGUG    AAUC AAC G  A
GG  U                           C         ----    U   A GU
Stem-loop sequence GCUGUCCAAUCGAUUUGUUGGUUUUAACUGACUUUGUCACCUUUUUAGUUUGCAAAAAUGGACAAUCUAAGUGACAAAGCCAGUUAAAACCAACAAAUUGGUUGGGCUGCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ048887.1
ncRNA:21   GGCGUCGGGUUGGUUAAACAA   1
  *|*||||*|||||||||||||
targets:29   GCACAGCGCAACCAAUUUGUU   49

2.0 TSA: Zea mays contig50005, mRNA sequence NA coding protein psRNATarget