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BaseInfo

ncRNA ID	novel_zma_miR7575
Species	Zea mays
Class	miRNA
Genome position	Chr2:24157348-24157461 [+]
Reference genome	RefGen_v4
Source	SRR3341856;SRR3341905
Length	24
Mature sequence(if miRNA)	91 - AAAAUGGAAUAAAAUGGUGGGACU - 114
Stem-loop(if miRNA)	--    UA                  -UUCA      C     A         AAAC   UCCC  CAUUUUAUUCCAUUUUAG     AAAUUG UAAAU UAGAAACUA    U   ||||  ||||||||||||||||||     |||||| ||||| |||||||||    C   AGGG  GUAAAAUAAGGUAAAAUC     UUUAAC GUUUA AUCUUUGAU    U UC    UG                  UGAUA      A     A         CUUA
Stem-loop sequence	UCCCUACAUUUUAUUCCAUUUUAGUUCAAAAUUGCUAAAUAUAGAAACUAAAACUCUAUUCUAGUUUCUAAAUUUGACAAUUUAUAGUCUAAAAUGGAAUAAAAUGGUGGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654984.2	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   |||||||=|||||||||||||||| targets:2933   AGUCCCAUCAUUUUAUUCCAUUUU   2956 Target Full Sequence	1.0	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   |||||||=|||||||||||||||| targets:170   AGUCCCAUCAUUUUAUUCCAUUUU   193 Target Full Sequence	1.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*||||||||||||||||| targets:294   AGUCCCUCCAUUUUAUUCCAUUUU   317 Target Full Sequence	1.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   |||||||=|||||||||||||||| targets:45   AGUCCCAUCAUUUUAUUCCAUUUU   68 Target Full Sequence	1.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*||||||||||||||||| targets:169   AGUCCCUCCAUUUUAUUCCAUUUU   192 Target Full Sequence	1.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   |||||||=|||||||||||||||| targets:45   AGUCCCAUCAUUUUAUUCCAUUUU   68 Target Full Sequence	1.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*||||||||||||||||| targets:169   AGUCCCUCCAUUUUAUUCCAUUUU   192 Target Full Sequence	1.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   |||||||=|||||||||||||||| targets:45   AGUCCCAUCAUUUUAUUCCAUUUU   68 Target Full Sequence	1.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*||||||||||||||||| targets:169   AGUCCCUCCAUUUUAUUCCAUUUU   192 Target Full Sequence	1.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   |||||||=||||||||||=||||| targets:1568   AGUCCCAUCAUUUUAUUCUAUUUU   1591 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ235170.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   |||||||=||||||||||=||||| targets:31   AGUCCCAUCAUUUUAUUCUAUUUU   54 Target Full Sequence	2.5	Sequence 1165 from Patent EP2985353	NA	coding protein	psRNATarget
HI403040.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   |||||||=||||||||||=||||| targets:31   AGUCCCAUCAUUUUAUUCUAUUUU   54 Target Full Sequence	2.5	Sequence 1165 from Patent EP2074227	NA	coding protein	psRNATarget
JB163501.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   |||||||=||||||||||=||||| targets:31   AGUCCCAUCAUUUUAUUCUAUUUU   54 Target Full Sequence	2.5	Sequence 1165 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*||||||||||||||||| targets:78   AGUCCCUCCAUUUUAUUCCAUUUU   101 Target Full Sequence	1.0	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*||||||||||||||||| targets:78   AGUCCCUCCAUUUUAUUCCAUUUU   101 Target Full Sequence	1.0	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*||||||||||||||||| targets:78   AGUCCCUCCAUUUUAUUCCAUUUU   101 Target Full Sequence	1.0	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||=|*||||||||||||||||| targets:2151   AGUCUCUCCAUUUUAUUCCAUUUU   2174 Target Full Sequence	1.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001174830.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*=|||||||||||||||| targets:2099   AGUCCCUUCAUUUUAUUCCAUUUU   2122 Target Full Sequence	2.0	Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA	NA	coding protein	psRNATarget
BT063047.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*=|||||||||||||||| targets:2099   AGUCCCUUCAUUUUAUUCCAUUUU   2122 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*=|||||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAUUUU   52 Target Full Sequence	2.0	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
HI403052.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*=|||||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAUUUU   52 Target Full Sequence	2.0	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
JB163513.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*=|||||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAUUUU   52 Target Full Sequence	2.0	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*|||||||||||||*||| targets:2989   AGUCCCUCCAUUUUAUUCCACUUU   3012 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*|||||||||||||*||| targets:2600   AGUCCCUCCAUUUUAUUCCACUUU   2623 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*|||||||||||||*||| targets:482   AGUCCCUCCAUUUUAUUCCACUUU   505 Target Full Sequence	2.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||**|||||||||||||||| targets:999   AGUCCCUACAUUUUAUUCCAUUUU   1022 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945607.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||*|||*||||||||||||| targets:143   AGUCCCUCCAAUUUAUUCCAUUUU   166 Target Full Sequence	2.0	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||=|*|||*||||||||||||| targets:1126   AGUCUCUCCACUUUAUUCCAUUUU   1149 Target Full Sequence	2.0	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||=|*|||*||||||||||||| targets:1126   AGUCUCUCCACUUUAUUCCAUUUU   1149 Target Full Sequence	2.0	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||=|**|||||||||||||||| targets:842   AGUCUCUACAUUUUAUUCCAUUUU   865 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||=|**|||||||||||||||| targets:842   AGUCUCUACAUUUUAUUCCAUUUU   865 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   |||=||**|||||||||||||||| targets:579   AGUUCCUACAUUUUAUUCCAUUUU   602 Target Full Sequence	2.0	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001305845.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   |*||==*||||||||||||||||| targets:2084   AAUCUUUCCAUUUUAUUCCAUUUU   2107 Target Full Sequence	2.0	Zea mays uncharacterized LOC542022 (LOC542022), mRNA	NA	coding protein	psRNATarget
EZ052166.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||***||||||||||||||| targets:779   AGUCCCUAGAUUUUAUUCCAUUUU   802 Target Full Sequence	3.0	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget
JB163455.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||**||*||||||||||||| targets:29   AGUCCCUACACUUUAUUCCAUUUU   52 Target Full Sequence	3.0	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||**||*||||||||||||| targets:29   AGUCCCUACACUUUAUUCCAUUUU   52 Target Full Sequence	3.0	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
HI402994.1	ncRNA:24   UCAGGGUGGUAAAAUAAGGUAAAA   1   ||||||**||*||||||||||||| targets:29   AGUCCCUACACUUUAUUCCAUUUU   52 Target Full Sequence	3.0	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget