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BaseInfo

ncRNA ID	novel_zma_miR7574
Species	Zea mays
Class	miRNA
Genome position	Chr2:22486524-22486642 [+]
Reference genome	RefGen_v4
Source	SRR3341856
Length	21
Mature sequence(if miRNA)	99 - AUAUGGAUUGGAAAUAACCGA - 119
Stem-loop(if miRNA)	--    CGC  U                -    AG    AUUC  UUUAAAUCCAUAGCAAG   GGUU   UC CAGUCCAUAUGGAUUG AGUG  AUUG    GG                 U   ||||   || |||||||||||||||| ||||  ||||    ||                 C   CCAA   AG GUUAGGUAUACCUAGC UCAC  UAAC    CG                 A AG    UAA  -                C    -A    ---C  UCCUAGCUCUGUCUAAA
Stem-loop sequence	GGUUCGCUCUCAGUCCAUAUGGAUUGAGUGAGAUUGAUUCGGUUUAAAUCCAUAGCAAGUCAAAAUCUGUCUCGAUCCUGCCCAAUACACUCCGAUCCAUAUGGAUUGGAAAUAACCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008680349.2	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:1887   UCGGUUAUUUUCAAUCCAUAU   1907 Target Full Sequence	1.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035012.1	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:1526   UCGGUUAUUUUCAAUCCAUAU   1546 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:1526   UCGGUUAUUUUCAAUCCAUAU   1546 Target Full Sequence	1.5	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
BT068463.1	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:1146   UCGGUUAUUUUCAAUCCAUAU   1166 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT037847.1	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:1213   UCGGUUAUUUUCAAUCCAUAU   1233 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0199C24 mRNA, complete cds	NA	coding protein	psRNATarget
BT018999.1	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:383   UCGGUUAUUUUCAAUCCAUAU   403 Target Full Sequence	1.5	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
BT061531.2	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:767   UCGGUUAUUUUCAAUCCAUAU   787 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
DQ246079.1	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:1070   UCGGUUAUUUUCAAUCCAUAU   1090 Target Full Sequence	1.5	Zea mays clone 14671 mRNA sequence	NA	coding protein	psRNATarget
EU967708.1	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:1029   UCGGUUAUUUUCAAUCCAUAU   1049 Target Full Sequence	1.5	Zea mays clone 305479 RER1A protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151506.1	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:874   UCGGUUAUUUUCAAUCCAUAU   894 Target Full Sequence	1.5	Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA	NA	coding protein	psRNATarget
EU972032.1	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:874   UCGGUUAUUUUCAAUCCAUAU   894 Target Full Sequence	1.5	Zea mays clone 373636 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT068594.1	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:844   UCGGUUAUUUUCAAUCCAUAU   864 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds	NA	coding protein	psRNATarget
AY104043.1	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:847   UCGGUUAUUUUCAAUCCAUAU   867 Target Full Sequence	1.5	Zea mays PCO145885 mRNA sequence	NA	coding protein	psRNATarget
EU951312.1	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:307   UCGGUUAUUUUCAAUCCAUAU   327 Target Full Sequence	1.5	Zea mays clone 695515 mRNA sequence	NA	coding protein	psRNATarget
EZ101759.1	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   ||||||||||=|||||||||| targets:21   UCGGUUAUUUUCAAUCCAUAU   41 Target Full Sequence	1.5	TSA: Zea mays contig37415, mRNA sequence	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||||*||||| targets:3359   UCGGUUAUUUCCAAUACAUAU   3379 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||||*||||| targets:3328   UCGGUUAUUUCCAAUACAUAU   3348 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:21   AGCCAAUAAAGGUUAGGUAUA   1   |||||||||||||||*||||| targets:3315   UCGGUUAUUUCCAAUACAUAU   3335 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
HI408824.1	ncRNA:19   CCAAUAAAGGUUAGGUAUA   1   ||||||||=|||||||||| targets:1   GGUUAUUUUCAAUCCAUAU   19 Target Full Sequence	1.5	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
JB169285.1	ncRNA:19   CCAAUAAAGGUUAGGUAUA   1   ||||||||=|||||||||| targets:1   GGUUAUUUUCAAUCCAUAU   19 Target Full Sequence	1.5	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:19   CCAAUAAAGGUUAGGUAUA   1   ||||||||=|||||||||| targets:1   GGUUAUUUUCAAUCCAUAU   19 Target Full Sequence	1.5	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget