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BaseInfo

ncRNA ID	novel_zma_miR7568
Species	Zea mays
Class	miRNA
Genome position	Chr6:98967274-98967361 [-]
Reference genome	RefGen_v4
Source	SRR2939884;SRR4237220;SRR4237225;SRR4237226;SRR4237227;SRR5105963
Length	21
Mature sequence(if miRNA)	68 - UUGACAGAAGAGAGCGAGCAC - 88
Stem-loop(if miRNA)	--         -    -        C     C  C   C      G   UUGACAGAA GAGA GCGAGCAC UGGCG GG GAC GGCAUG A   ||||||||| |||| |||||||| ||||| || ||| |||||| A   GACUGUCUU CUCU CGCUCGUG GCCGC CC CUG CCGUAC C CC         U    U        C     -  -   -      G
Stem-loop sequence	UUGACAGAAGAGAGCGAGCACCUGGCGCGGCGACCGGCAUGGAACGCAUGCCGUCCCCGCCGCGUGCUCGCUUCUCUUUCUGUCAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI408583.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:74   GUGCUCACUCUCUUCUGUCAA   94 Target Full Sequence	1.0	Sequence 6708 from Patent EP2074227	NA	coding protein	psRNATarget
JB169044.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:74   GUGCUCACUCUCUUCUGUCAA   94 Target Full Sequence	1.0	Sequence 6708 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240713.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:74   GUGCUCACUCUCUUCUGUCAA   94 Target Full Sequence	1.0	Sequence 6708 from Patent EP2985353	NA	coding protein	psRNATarget
EU947023.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:284   GUGCUCUCUCUCUUCUGUCAA   304 Target Full Sequence	1.0	Zea mays clone 326226 mRNA sequence	NA	coding protein	psRNATarget
HQ858679.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:764   GUGCUCUCUCUCUUCUGUCAA   784 Target Full Sequence	1.0	Zea mays clone UT1135 SBP transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
KJ726823.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:779   GUGCUCUCUCUCUUCUGUCAA   799 Target Full Sequence	1.0	Zea mays clone pUT3362 SBP transcription factor (SBP23) mRNA, partial cds	NA	coding protein	psRNATarget
KJ726820.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:812   GUGCUCUCUCUCUUCUGUCAA   832 Target Full Sequence	1.0	Zea mays clone pUT3359 SBP transcription factor (SBP8) mRNA, partial cds	NA	coding protein	psRNATarget
AJ011619.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:559   GUGCUCUCUCUCUUCUGUCAA   579 Target Full Sequence	1.0	Zea mays mRNA for SBP-domain protein 6, partial	NA	coding protein	psRNATarget
AJ011618.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:595   GUGCUCUCUCUCUUCUGUCAA   615 Target Full Sequence	1.0	Zea mays mRNA for SBP-domain protein 5, partial	NA	coding protein	psRNATarget
KJ727943.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1124   GUGCUCUCUCUCUUCUGUCAA   1144 Target Full Sequence	1.0	Zea mays clone pUT6039 SBP transcription factor (SBP20) mRNA, partial cds	NA	coding protein	psRNATarget
EU972995.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:918   GUGCUCUCUCUCUUCUGUCAA   938 Target Full Sequence	1.0	Zea mays clone 391427 squamosa promoter-binding-like protein 9 mRNA, complete cds	NA	coding protein	psRNATarget
BT041777.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:929   GUGCUCUCUCUCUUCUGUCAA   949 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0053F21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143473.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:932   GUGCUCUCUCUCUUCUGUCAA   952 Target Full Sequence	1.0	Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP23), mRNA	NA	coding protein	psRNATarget
BT037938.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:932   GUGCUCUCUCUCUUCUGUCAA   952 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0203K20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001308478.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1055   GUGCUCUCUCUCUUCUGUCAA   1075 Target Full Sequence	1.0	Zea mays squamosa promoter-binding-like protein 17 (LOC542666), mRNA	NA	coding protein	psRNATarget
NM_001301523.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1055   GUGCUCUCUCUCUUCUGUCAA   1075 Target Full Sequence	1.0	Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), mRNA	NA	coding protein	psRNATarget
BT054334.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1055   GUGCUCUCUCUCUUCUGUCAA   1075 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0338P09 mRNA, complete cds	NA	coding protein	psRNATarget
BT039521.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1228   GUGCUCUCUCUCUUCUGUCAA   1248 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0017D10 mRNA, complete cds	NA	coding protein	psRNATarget
BT084089.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1046   GUGCUCUCUCUCUUCUGUCAA   1066 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073B10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645221.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1252   GUGCUCUCUCUCUUCUGUCAA   1272 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020553266.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1364   GUGCUCUCUCUCUUCUGUCAA   1384 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008645218.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1373   GUGCUCUCUCUCUUCUGUCAA   1393 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679336.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1311   GUGCUCUCUCUCUUCUGUCAA   1331 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP20), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679338.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1342   GUGCUCUCUCUCUUCUGUCAA   1362 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP20), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008679337.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1363   GUGCUCUCUCUCUUCUGUCAA   1383 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP20), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681329.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1360   GUGCUCUCUCUCUUCUGUCAA   1380 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681328.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1363   GUGCUCUCUCUCUUCUGUCAA   1383 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681327.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1363   GUGCUCUCUCUCUUCUGUCAA   1383 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT039945.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1526   GUGCUCUCUCUCUUCUGUCAA   1546 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0054D09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553268.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1561   GUGCUCUCUCUCUUCUGUCAA   1581 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008665371.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1408   GUGCUCUCUCUCUUCUGUCAA   1428 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC541996), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008665363.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1411   GUGCUCUCUCUCUUCUGUCAA   1431 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC541996), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957096.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1374   GUGCUCUCUCUCUUCUGUCAA   1394 Target Full Sequence	1.0	Zea mays clone 1582615 mRNA sequence	NA	coding protein	psRNATarget
BT053864.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1687   GUGCUCUCUCUCUUCUGUCAA   1707 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0339F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152255.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1687   GUGCUCUCUCUCUUCUGUCAA   1707 Target Full Sequence	1.0	Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), mRNA	NA	coding protein	psRNATarget
BT064560.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1576   GUGCUCUCUCUCUUCUGUCAA   1596 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0183C18 mRNA, complete cds	NA	coding protein	psRNATarget
BT064536.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1621   GUGCUCUCUCUCUUCUGUCAA   1641 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0178N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175227.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1621   GUGCUCUCUCUCUUCUGUCAA   1641 Target Full Sequence	1.0	Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP20), mRNA	NA	coding protein	psRNATarget
NM_001175355.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1613   GUGCUCUCUCUCUUCUGUCAA   1633 Target Full Sequence	1.0	Zea mays uncharacterized LOC100382631 (LOC100382631), mRNA	NA	coding protein	psRNATarget
BT064918.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:1613   GUGCUCUCUCUCUUCUGUCAA   1633 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0014E19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553267.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||| targets:2002   GUGCUCUCUCUCUUCUGUCAA   2022 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ086842.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:43   GUGCUCUCUCUCUUCUGUCAG   63 Target Full Sequence	2.0	TSA: Zea mays contig22488, mRNA sequence	NA	coding protein	psRNATarget
AY107331.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:127   GUGCUCUCUCUCUUCUGUCAG   147 Target Full Sequence	2.0	Zea mays PCO114323 mRNA sequence	NA	coding protein	psRNATarget
XM_008682670.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:374   GUGCUCUCUCUCUUCUGUCAG   394 Target Full Sequence	2.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (LOC103656018), mRNA	NA	coding protein	psRNATarget
BT088183.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:826   GUGCUCUCUCUCUUCUGUCAG   846 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0047E05 mRNA, complete cds	NA	coding protein	psRNATarget
KJ727979.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:1070   GUGCUCUCUCUCUUCUGUCAG   1090 Target Full Sequence	2.0	Zea mays clone pUT6094 SBP transcription factor (SBP25) mRNA, partial cds	NA	coding protein	psRNATarget
XM_020543213.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:788   GUGCUCUCUCUCUUCUGUCAG   808 Target Full Sequence	2.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 2 (LOC103637478), mRNA	NA	coding protein	psRNATarget
KU131572.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:1000   GUGCUCUCUCUCUUCUGUCAG   1020 Target Full Sequence	2.0	Zea mays cultivar B73 squamosa promoter binding-like protein (Tga1) mRNA, complete cds	NA	coding protein	psRNATarget
KU131571.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:1014   GUGCUCUCUCUCUUCUGUCAG   1034 Target Full Sequence	2.0	Zea mays cultivar B73 squamosa promoter binding-like protein (Not1) mRNA, complete cds	NA	coding protein	psRNATarget
AY883560.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:993   GUGCUCUCUCUCUUCUGUCAG   1013 Target Full Sequence	2.0	Zea mays cultivar inbred line W22 teosinte glume architecture 1 (tga1) mRNA, complete cds	NA	coding protein	psRNATarget
BT035779.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:947   GUGCUCUCUCUCUUCUGUCAG   967 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0083B18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138620.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:947   GUGCUCUCUCUCUUCUGUCAG   967 Target Full Sequence	2.0	Zea mays Squamosa promoter-binding-like protein 2 (pco114323), mRNA	NA	coding protein	psRNATarget
XM_008678337.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:855   GUGCUCUCUCUCUUCUGUCAG   875 Target Full Sequence	2.0	PREDICTED: Zea mays Squamosa promoter-binding-like protein 2 (pco114323), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU965000.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:960   GUGCUCUCUCUCUUCUGUCAG   980 Target Full Sequence	2.0	Zea mays clone 283067 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645498.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:1252   GUGCUCUCUCUCUUCUGUCAG   1272 Target Full Sequence	2.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (SBP25), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU964361.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:1203   GUGCUCUCUCUCUUCUGUCAG   1223 Target Full Sequence	2.0	Zea mays clone 278288 mRNA sequence	NA	coding protein	psRNATarget
XM_008645496.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:1353   GUGCUCUCUCUCUUCUGUCAG   1373 Target Full Sequence	2.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (SBP25), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU969824.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:1353   GUGCUCUCUCUCUUCUGUCAG   1373 Target Full Sequence	2.0	Zea mays clone 336108 squamosa promoter-binding-like protein 11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680176.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:1248   GUGCUCUCUCUCUUCUGUCAG   1268 Target Full Sequence	2.0	PREDICTED: Zea mays teosinte glume architecture 1-like (LOC103653214), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963637.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:1402   GUGCUCUCUCUCUUCUGUCAG   1422 Target Full Sequence	2.0	Zea mays clone 265056 squamosa promoter-binding-like protein 11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156062.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:1402   GUGCUCUCUCUCUUCUGUCAG   1422 Target Full Sequence	2.0	Zea mays squamosa promoter-binding-like protein 11 (SBP25), mRNA	NA	coding protein	psRNATarget
XM_008645497.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:1418   GUGCUCUCUCUCUUCUGUCAG   1438 Target Full Sequence	2.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (SBP25), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU973300.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:1462   GUGCUCUCUCUCUUCUGUCAG   1482 Target Full Sequence	2.0	Zea mays clone 396397 mRNA sequence	NA	coding protein	psRNATarget
XM_008645495.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:1669   GUGCUCUCUCUCUUCUGUCAG   1689 Target Full Sequence	2.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (SBP25), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680174.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:1586   GUGCUCUCUCUCUUCUGUCAG   1606 Target Full Sequence	2.0	PREDICTED: Zea mays teosinte glume architecture 1-like (LOC103653213), mRNA	NA	coding protein	psRNATarget
XM_008676419.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||= targets:2221   GUGCUCUCUCUCUUCUGUCAG   2241 Target Full Sequence	2.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 2 (LOC103650833), mRNA	NA	coding protein	psRNATarget
JC611929.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:632   GUGCUCUCUCUCUUCUGUCAU   652 Target Full Sequence	2.0	Sequence 91 from Patent WO2014106838	NA	coding protein	psRNATarget
HQ858690.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:755   GUGCUCUCUCUCUUCUGUCAU   775 Target Full Sequence	2.0	Zea mays clone UT1146 SBP transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
NM_001143577.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:591   GUGCUCUCUCUCUUCUGUCAU   611 Target Full Sequence	2.0	Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100217221), mRNA	NA	coding protein	psRNATarget
BT038156.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:591   GUGCUCUCUCUCUUCUGUCAU   611 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0214P19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065275.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:907   GUGCUCUCUCUCUUCUGUCAU   927 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0077F03 mRNA, complete cds	NA	coding protein	psRNATarget
HQ858696.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:632   GUGCUCUCUCUCUUCUGUCAU   652 Target Full Sequence	2.0	Zea mays clone UT1152 SBP transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
EU970791.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:587   GUGCUCUCUCUCUUCUGUCAU   607 Target Full Sequence	2.0	Zea mays clone 350913 mRNA sequence	NA	coding protein	psRNATarget
BT064694.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:895   GUGCUCUCUCUCUUCUGUCAU   915 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0036O07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678828.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:877   GUGCUCUCUCUCUUCUGUCAU   897 Target Full Sequence	2.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100278824), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU975549.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:955   GUGCUCUCUCUCUUCUGUCAU   975 Target Full Sequence	2.0	Zea mays clone 492287 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151973.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:955   GUGCUCUCUCUCUUCUGUCAU   975 Target Full Sequence	2.0	Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100278824), mRNA	NA	coding protein	psRNATarget
XM_008678827.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:901   GUGCUCUCUCUCUUCUGUCAU   921 Target Full Sequence	2.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100278824), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001318379.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:741   GUGCUCUCUCUCUUCUGUCAU   761 Target Full Sequence	2.0	Zea mays Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279436), mRNA	NA	coding protein	psRNATarget
XM_008678826.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:935   GUGCUCUCUCUCUUCUGUCAU   955 Target Full Sequence	2.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100278824), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU964656.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:763   GUGCUCUCUCUCUUCUGUCAU   783 Target Full Sequence	2.0	Zea mays clone 280651 mRNA sequence	NA	coding protein	psRNATarget
BT054238.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:889   GUGCUCUCUCUCUUCUGUCAU   909 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0189E24 mRNA, complete cds	NA	coding protein	psRNATarget
BT053875.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:1562   GUGCUCUCUCUCUUCUGUCAU   1582 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0379K14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152261.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:1562   GUGCUCUCUCUCUUCUGUCAU   1582 Target Full Sequence	2.0	Zea mays Squamosa promoter-binding-like protein 6 (LOC100279240), mRNA	NA	coding protein	psRNATarget
XM_008652792.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:1971   GUGCUCUCUCUCUUCUGUCAU   1991 Target Full Sequence	2.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100217221), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669545.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   ||||||*|||||||||||||* targets:1845   GUGCUCUCUCUCUUCUGUCAU   1865 Target Full Sequence	2.0	PREDICTED: Zea mays Squamosa promoter-binding-like protein 6 (LOC100279240), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HQ858786.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   *|||||*|||||||||||||= targets:740   AUGCUCUCUCUCUUCUGUCAG   760 Target Full Sequence	2.0	Zea mays clone UT1800 SBP transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
BT087508.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   *|||||*|||||||||||||= targets:815   AUGCUCUCUCUCUUCUGUCAG   835 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0098L17 mRNA, complete cds	NA	coding protein	psRNATarget
BT033415.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   *|||||*|||||||||||||= targets:840   AUGCUCUCUCUCUUCUGUCAG   860 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0223G18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001136780.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   *|||||*|||||||||||||= targets:840   AUGCUCUCUCUCUUCUGUCAG   860 Target Full Sequence	2.0	Zea mays SBP transcription factor (SBP12), mRNA	NA	coding protein	psRNATarget
XM_008681335.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   |||*||||||||*|||||||| targets:690   GUGGUCGCUCUCCUCUGUCAA   710 Target Full Sequence	2.5	PREDICTED: Zea mays probable L-type lectin-domain containing receptor kinase S.5 (LOC103654507), mRNA	NA	coding protein	psRNATarget
NM_001321489.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   *|||||*|||||||||||||* targets:593   AUGCUCUCUCUCUUCUGUCAU   613 Target Full Sequence	2.0	Zea mays uncharacterized LOC107436005 (LOC107436005), mRNA	NA	coding protein	psRNATarget
AY103643.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   *|||||*|||||||||||||* targets:317   AUGCUCUCUCUCUUCUGUCAU   337 Target Full Sequence	2.0	Zea mays PCO133434 mRNA sequence	NA	coding protein	psRNATarget
NM_001156764.2	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   *|||||*|||||||||||||* targets:724   AUGCUCUCUCUCUUCUGUCAU   744 Target Full Sequence	2.0	Zea mays uncharacterized LOC100283866 (pco133434), mRNA	NA	coding protein	psRNATarget
EU966210.1	ncRNA:21   CACGAGCGAGAGAAGACAGUU   1   *|||||*|||||||||||||* targets:725   AUGCUCUCUCUCUUCUGUCAU   745 Target Full Sequence	2.0	Zea mays clone 292600 SBP domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget