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BaseInfo

ncRNA ID	novel_zma_miR7561
Species	Zea mays
Class	miRNA
Genome position	Chr4:33165157-33165203 [+]
Reference genome	RefGen_v4
Source	SRR2647467
Length	22
Mature sequence(if miRNA)	1 - AUAGUCUAUGGCGCCGAGCUGU - 22
Stem-loop(if miRNA)	--      U           CUG   AUAGUC AUGGCGCCGAG   U   |||||| |||||||||||   G   UAUCGG UACCGCGGCUC   U GG      U           CAU
Stem-loop sequence	AUAGUCUAUGGCGCCGAGCUGUGUUACCUCGGCGCCAUUGGCUAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163397.1	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   |||||||||||||||||=|||| targets:30   ACAGCUCGGCGCCAUAGGCUAU   51 Target Full Sequence	1.5	Sequence 1061 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235066.1	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   |||||||||||||||||=|||| targets:30   ACAGCUCGGCGCCAUAGGCUAU   51 Target Full Sequence	1.5	Sequence 1061 from Patent EP2985353	NA	coding protein	psRNATarget
HI402936.1	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   |||||||||||||||||=|||| targets:30   ACAGCUCGGCGCCAUAGGCUAU   51 Target Full Sequence	1.5	Sequence 1061 from Patent EP2074227	NA	coding protein	psRNATarget
BT034188.1	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   |||||||||||||||||=|||| targets:678   ACAGCUCGGCGCCAUAGGCUAU   699 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds	NA	coding protein	psRNATarget
BT034188.1	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   *=*||||||||||||||=|||| targets:642   UUUGCUCGGCGCCAUAGGCUAU   663 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137355.1	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   |||||||||||||||||=|||| targets:678   ACAGCUCGGCGCCAUAGGCUAU   699 Target Full Sequence	1.5	Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA	NA	coding protein	psRNATarget
NM_001137355.1	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   *=*||||||||||||||=|||| targets:642   UUUGCUCGGCGCCAUAGGCUAU   663 Target Full Sequence	1.5	Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   |||||||||||||||||=|||| targets:40   ACAGCUCGGCGCCAUAGGCUAU   61 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   =||*|||||||||||||*|||| targets:1302   GCACCUCGGCGCCAUAGCCUAU   1323 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   |||||||||||||||||=|||| targets:38   ACAGCUCGGCGCCAUAGGCUAU   59 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   =||*|||||||||||||*|||| targets:1300   GCACCUCGGCGCCAUAGCCUAU   1321 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   |||||||||||||||||=|||| targets:98   ACAGCUCGGCGCCAUAGGCUAU   119 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   =||*|||||||||||||*|||| targets:1359   GCACCUCGGCGCCAUAGCCUAU   1380 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   |||||||||||||||||=|||| targets:98   ACAGCUCGGCGCCAUAGGCUAU   119 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   =||*|||||||||||||*|||| targets:1359   GCACCUCGGCGCCAUAGCCUAU   1380 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666663.2	ncRNA:22   UGUCGAGCCGCGGUAUCUGAUA   1   ==|*|||||||||||||*|||| targets:862   GUACCUCGGCGCCAUAGCCUAU   883 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget