Search result

BaseInfo

ncRNA ID novel_zma_miR7560
Species Zea mays
Class miRNA
Genome position Chr4:27666633-27666764 [+]
Reference genome RefGen_v4
Source SRR2647467
Length 24
Mature sequence(if miRNA) 1 - UCUCCAACAGAUCUCUUAAAGCAG - 24
Stem-loop(if miRNA) --          A         -  A  AGA UG   -GUGGGG     --    AC           A
  UCUCCAACAG UCUCUUAAA GC GC   U  AUU       AGCCC  AAAA  CCCUCAUUUGU G
  |||||||||| ||||||||| || ||   |  |||       |||||  ||||  |||||||||||
  AGAGGUUGUC AGGGGAUUU CG CG   G  UGA       UCGGG  UUUU  GGGAGUAAACA C
AC          A         U  -  -AG GU   AAAAGUA     AA    CA           U
Stem-loop sequence UCUCCAACAGAUCUCUUAAAGCAGCAGAUUGAUUGUGGGGAGCCCAAAAACCCCUCAUUUGUAGCUACAAAUGAGGGACUUUUAAGGGCUAUGAAAAAGUUGGGAGCGCUUUUAGGGGAACUGUUGGAGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ050474.1
ncRNA:24   GACGAAAUUCUCUAGACAACCUCU   1
  ||||||||||=|||||||||||||
targets:340   CUGCUUUAAGGGAUCUGUUGGAGA   363

1.0 TSA: Zea mays contig51594, mRNA sequence NA coding protein psRNATarget
BT066766.1
ncRNA:24   GAC---GAAAUUCUCUAGACAACCUCU   1
  |||---|||||||=|||||||||||||
targets:51   CUGUCGCUUUAAGGGAUCUGUUGGAGA   77

1.0 Zea mays full-length cDNA clone ZM_BFb0066D22 mRNA, complete cds NA coding protein psRNATarget