Search result

BaseInfo

ncRNA ID novel_zma_miR7555
Species Zea mays
Class miRNA
Genome position Chr3:187242086-187242161 [+]
Reference genome RefGen_v4
Source SRR2647467
Length 24
Mature sequence(if miRNA) 1 - CCUCUGUUUCUUUUUAUUAGUCGC - 24
Stem-loop(if miRNA) --                                   A
  CCUCUGUUUCUUUUUAUUAGUCGCUGGAUAGUGCA U
  |||||||||||||||||||||||||||||||||||
  GGAGGCAAAGAAAAAUAAUCAGCGACCUAUCACGU U
AG                                   U
Stem-loop sequence CCUCUGUUUCUUUUUAUUAGUCGCUGGAUAGUGCAAUUUUGCACUAUCCAGCGACUAAUAAAAAGAAACGGAGGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ237954.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  ||||||||||||||||||||||||
targets:55   GCGACUAAUAAAAAGAAACAGAGG   78

0.0 Sequence 3949 from Patent EP2985353 NA coding protein psRNATarget
JB166285.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  ||||||||||||||||||||||||
targets:55   GCGACUAAUAAAAAGAAACAGAGG   78

0.0 Sequence 3949 from Patent EP2559767 NA coding protein psRNATarget
HI405824.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  ||||||||||||||||||||||||
targets:55   GCGACUAAUAAAAAGAAACAGAGG   78

0.0 Sequence 3949 from Patent EP2074227 NA coding protein psRNATarget
HI405830.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=||||
targets:55   GCGACUAAUAAAAAGAAACGGAGG   78

1.5 Sequence 3955 from Patent EP2074227 NA coding protein psRNATarget
LQ237960.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=||||
targets:55   GCGACUAAUAAAAAGAAACGGAGG   78

1.5 Sequence 3955 from Patent EP2985353 NA coding protein psRNATarget
JB166291.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=||||
targets:55   GCGACUAAUAAAAAGAAACGGAGG   78

1.5 Sequence 3955 from Patent EP2559767 NA coding protein psRNATarget
XM_008664463.2
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=||||
targets:148   GCGACUAAUAAAAAGAAACGGAGG   171

1.5 PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X3, mRNA NA coding protein psRNATarget
EU973473.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=||||
targets:704   GCGACUAAUAAAAAGAAACGGAGG   727

1.5 Zea mays clone 399411 mRNA sequence NA coding protein psRNATarget
EU970288.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=||||
targets:1378   GCGACUAAUAAAAAGAAACGGAGG   1401

1.5 Zea mays clone 343094 metal tolerance protein C3 mRNA, complete cds NA coding protein psRNATarget
BT024153.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=||||
targets:236   GCGACUAAUAAAAAGAAACGGAGG   259

1.5 Zea mays clone EL01N0438E01 mRNA sequence NA coding protein psRNATarget
XM_008669400.2
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=||||
targets:1655   GCGACUAAUAAAAAGAAACGGAGG   1678

1.5 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008675770.2
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=||||
targets:1863   GCGACUAAUAAAAAGAAACGGAGG   1886

1.5 PREDICTED: Zea mays pectinesterase-like (LOC103650113), mRNA NA coding protein psRNATarget
XM_020542418.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=||||
targets:2030   GCGACUAAUAAAAAGAAACGGAGG   2053

1.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008658752.2
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=||||
targets:2097   GCGACUAAUAAAAAGAAACGGAGG   2120

1.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008664460.2
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=||||
targets:168   GCGACUAAUAAAAAGAAACGGAGG   191

1.5 PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001143050.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |=|||||||||||||||||=||||
targets:1139   GUGACUAAUAAAAAGAAACGGAGG   1162

1.5 Zea mays uncharacterized LOC100216637 (LOC100216637), mRNA NA coding protein psRNATarget
BT037092.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |=|||||||||||||||||=||||
targets:1139   GUGACUAAUAAAAAGAAACGGAGG   1162

1.5 Zea mays full-length cDNA clone ZM_BFb0154F16 mRNA, complete cds NA coding protein psRNATarget
XM_020544903.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |=|||||||||||||||||=||||
targets:3196   GUGACUAAUAAAAAGAAACGGAGG   3219

1.5 PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020544902.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |=|||||||||||||||||=||||
targets:3205   GUGACUAAUAAAAAGAAACGGAGG   3228

1.5 PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X1, mRNA NA coding protein psRNATarget
HI403365.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=|||*
targets:36   GCGACUAAUAAAAAGAAACGGAGC   59

2.5 Sequence 1490 from Patent EP2074227 NA coding protein psRNATarget
JB163826.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=|||*
targets:36   GCGACUAAUAAAAAGAAACGGAGC   59

2.5 Sequence 1490 from Patent EP2559767 NA coding protein psRNATarget
LQ235495.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=|||*
targets:36   GCGACUAAUAAAAAGAAACGGAGC   59

2.5 Sequence 1490 from Patent EP2985353 NA coding protein psRNATarget
JB169084.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  *||||||||||||||||||=||||
targets:64   UCGACUAAUAAAAAGAAACGGAGG   87

1.5 Sequence 6748 from Patent EP2559767 NA coding protein psRNATarget
HI408623.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  *||||||||||||||||||=||||
targets:64   UCGACUAAUAAAAAGAAACGGAGG   87

1.5 Sequence 6748 from Patent EP2074227 NA coding protein psRNATarget
LQ240753.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  *||||||||||||||||||=||||
targets:64   UCGACUAAUAAAAAGAAACGGAGG   87

1.5 Sequence 6748 from Patent EP2985353 NA coding protein psRNATarget
BT070166.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=|||*
targets:819   GCGACUAAUAAAAAGAAACGGAGA   842

2.5 Zea mays full-length cDNA clone ZM_BFc0141C23 mRNA, complete cds NA coding protein psRNATarget
NM_001328133.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=|||*
targets:819   GCGACUAAUAAAAAGAAACGGAGA   842

2.5 Zea mays Methionyl-tRNA synthetase (LOC100384454), mRNA NA coding protein psRNATarget
XM_008656936.2
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||||||||||||||||=|||*
targets:219   GCGACUAAUAAAAAGAAACGGAGA   242

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA NA coding protein psRNATarget
HI410015.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:59   GCGACAAAUAAAAAGAAACGGAGG   82

2.5 Sequence 8140 from Patent EP2074227 NA coding protein psRNATarget
HI408618.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:59   GCGACAAAUAAAAAGAAACGGAGG   82

2.5 Sequence 6743 from Patent EP2074227 NA coding protein psRNATarget
HI409961.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:59   GCGACAAAUAAAAAGAAACGGAGG   82

2.5 Sequence 8086 from Patent EP2074227 NA coding protein psRNATarget
HI408945.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:59   GCGACAAAUAAAAAGAAACGGAGG   82

2.5 Sequence 7070 from Patent EP2074227 NA coding protein psRNATarget
JB170422.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:59   GCGACAAAUAAAAAGAAACGGAGG   82

2.5 Sequence 8086 from Patent EP2559767 NA coding protein psRNATarget
LQ241075.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:59   GCGACAAAUAAAAAGAAACGGAGG   82

2.5 Sequence 7070 from Patent EP2985353 NA coding protein psRNATarget
LQ240748.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:59   GCGACAAAUAAAAAGAAACGGAGG   82

2.5 Sequence 6743 from Patent EP2985353 NA coding protein psRNATarget
JB169079.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:59   GCGACAAAUAAAAAGAAACGGAGG   82

2.5 Sequence 6743 from Patent EP2559767 NA coding protein psRNATarget
JB169406.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:59   GCGACAAAUAAAAAGAAACGGAGG   82

2.5 Sequence 7070 from Patent EP2559767 NA coding protein psRNATarget
JB170476.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:59   GCGACAAAUAAAAAGAAACGGAGG   82

2.5 Sequence 8140 from Patent EP2559767 NA coding protein psRNATarget
LQ242145.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:59   GCGACAAAUAAAAAGAAACGGAGG   82

2.5 Sequence 8140 from Patent EP2985353 NA coding protein psRNATarget
LQ242091.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:59   GCGACAAAUAAAAAGAAACGGAGG   82

2.5 Sequence 8086 from Patent EP2985353 NA coding protein psRNATarget
EU964901.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:552   GCGACAAAUAAAAAGAAACGGAGG   575

2.5 Zea mays clone 282450 mRNA sequence NA coding protein psRNATarget
NM_001151882.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:624   GCGACAAAUAAAAAGAAACGGAGG   647

2.5 Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA NA coding protein psRNATarget
EU974849.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:624   GCGACAAAUAAAAAGAAACGGAGG   647

2.5 Zea mays clone 459794 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT060817.2
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:285   GCGACAAAUAAAAAGAAACGGAGG   308

2.5 Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds NA coding protein psRNATarget
EZ061772.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||*|||||||||||||||=||||
targets:239   GCGCCUAAUAAAAAGAAACGGAGG   262

1.5 TSA: Zea mays contig62894, mRNA sequence NA coding protein psRNATarget
XM_008671993.2
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:1221   GCGACAAAUAAAAAGAAACGGAGG   1244

2.5 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA NA coding protein psRNATarget
EU965844.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:1343   GCGACAAAUAAAAAGAAACGGAGG   1366

2.5 Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds NA coding protein psRNATarget
NM_001156655.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:1343   GCGACAAAUAAAAAGAAACGGAGG   1366

2.5 Zea mays wax synthase (LOC100283756), mRNA NA coding protein psRNATarget
XM_008647346.2
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:196   GCGACAAAUAAAAAGAAACGGAGG   219

2.5 PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA NA coding protein psRNATarget
XM_008651544.2
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:1410   GCGACAAAUAAAAAGAAACGGAGG   1433

2.5 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008671992.2
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:1327   GCGACAAAUAAAAAGAAACGGAGG   1350

2.5 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA NA coding protein psRNATarget
BT043433.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:1400   GCGACAAAUAAAAAGAAACGGAGG   1423

2.5 Zea mays full-length cDNA clone ZM_BFc0188B19 mRNA, complete cds NA coding protein psRNATarget
XM_008677073.2
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:1582   GCGACAAAUAAAAAGAAACGGAGG   1605

2.5 PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA NA coding protein psRNATarget
NM_001148943.2
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:1598   GCGACAAAUAAAAAGAAACGGAGG   1621

2.5 Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA NA coding protein psRNATarget
EU957018.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:2055   GCGACAAAUAAAAAGAAACGGAGG   2078

2.5 Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds NA coding protein psRNATarget
XM_008651543.2
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:2551   GCGACAAAUAAAAAGAAACGGAGG   2574

2.5 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546173.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:1518   GCGACAAAUAAAAAGAAACGGAGG   1541

2.5 PREDICTED: Zea mays myb-related protein P-like (LOC109943268), mRNA NA coding protein psRNATarget
XM_020546615.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:2851   GCGACAAAUAAAAAGAAACGGAGG   2874

2.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546614.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:2868   GCGACAAAUAAAAAGAAACGGAGG   2891

2.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546612.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:2974   GCGACAAAUAAAAAGAAACGGAGG   2997

2.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546613.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  |||||*|||||||||||||=||||
targets:3753   GCGACAAAUAAAAAGAAACGGAGG   3776

2.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020544250.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  *||||*|||||||||||||=||||
targets:2490   ACGACAAAUAAAAAGAAACGGAGG   2513

2.5 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase B120 (LOC103638818), transcript variant X2, mRNA NA coding protein psRNATarget
EZ067019.1
ncRNA:24   CGCUGAUUAUUUUUCUUUGUCUCC   1
  *|*||*|||||||||||||=||||
targets:2   ACAACAAAUAAAAAGAAACGGAGG   25

2.5 TSA: Zea mays contig02653, mRNA sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.