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BaseInfo

ncRNA ID novel_zma_miR7544
Species Zea mays
Class miRNA
Genome position Chr3:234180153-234180242 [-]
Reference genome RefGen_v4
Source SRR2647467;SRR1583941
Length 24
Mature sequence(if miRNA) 1 - GCCAUAGAUCUUAGCGCCGAGCUA - 24
Stem-loop(if miRNA) --U         CU   A              -   - G   -   
   CUCGGCGCU  GAU UGUGGCGCCGAGCU GGC U ACG CGGC
   |||||||||  ||| |||||||||||||| ||| | ||| |||A
   GAGCCGCGA  CUA AUACCGCGGCUUGA CCG G UGC GCCG
AUC         UU   G              U   C G   A   
Stem-loop sequence UCUCGGCGCUCUGAUAUGUGGCGCCGAGCUGGCUGACGCGGCAGCCGACGUGGCGCCUAGUUCGGCGCCAUAGAUCUUAGCGCCGAGCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166443.1
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  |||||||||||*||||||||||||
targets:145   UAGCUCGGCGCCAAGAUCUAUGGC   168

1.5 Sequence 4107 from Patent EP2559767 NA coding protein psRNATarget
HI405982.1
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  |||||||||||*||||||||||||
targets:145   UAGCUCGGCGCCAAGAUCUAUGGC   168

1.5 Sequence 4107 from Patent EP2074227 NA coding protein psRNATarget
LQ238112.1
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  |||||||||||*||||||||||||
targets:145   UAGCUCGGCGCCAAGAUCUAUGGC   168

1.5 Sequence 4107 from Patent EP2985353 NA coding protein psRNATarget
XM_020547329.1
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  *||||||||||*||||||||||||
targets:1837   GAGCUCGGCGCCAAGAUCUAUGGC   1860

1.5 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547327.1
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  *||||||||||*||||||||||||
targets:1862   GAGCUCGGCGCCAAGAUCUAUGGC   1885

1.5 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008668082.2
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  *||||||||||*||||||||||||
targets:1869   GAGCUCGGCGCCAAGAUCUAUGGC   1892

1.5 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008664820.2
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  ||*||||||||*||||||||||||
targets:13   UACCUCGGCGCCAAGAUCUAUGGC   36

1.5 PREDICTED: Zea mays uncharacterized LOC103641469 (LOC103641469), mRNA NA coding protein psRNATarget
XM_020544295.1
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  ||*||||||||*||||||||||||
targets:58   UACCUCGGCGCCAAGAUCUAUGGC   81

1.5 PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA NA coding protein psRNATarget
XM_020548134.1
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  ||*||||||||*||||||||||||
targets:35   UACCUCGGCGCCAAGAUCUAUGGC   58

1.5 PREDICTED: Zea mays uncharacterized LOC109943956 (LOC109943956), mRNA NA coding protein psRNATarget
XM_020545943.1
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  ||*||||||||*||||||||||||
targets:215   UACCUCGGCGCCAAGAUCUAUGGC   238

1.5 PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA NA coding protein psRNATarget
XM_008666282.2
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  ||*||||||||*||||||||||||
targets:215   UACCUCGGCGCCAAGAUCUAUGGC   238

1.5 PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA NA coding protein psRNATarget
XM_020545942.1
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  ||*||||||||*||||||||||||
targets:215   UACCUCGGCGCCAAGAUCUAUGGC   238

1.5 PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA NA coding protein psRNATarget
XM_008652363.2
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  ||*||||||||*||||||||||||
targets:219   UACCUCGGCGCCAAGAUCUAUGGC   242

1.5 PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA NA coding protein psRNATarget
XM_020541347.1
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  ||*||||||||*||||||||||||
targets:219   UACCUCGGCGCCAAGAUCUAUGGC   242

1.5 PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA NA coding protein psRNATarget
XM_020537732.1
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  ||*||||||||*||||||||||||
targets:284   UACCUCGGCGCCAAGAUCUAUGGC   307

1.5 PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA NA coding protein psRNATarget
XM_008654703.2
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  ||*||||||||*||||||||||||
targets:991   UACCUCGGCGCCAAGAUCUAUGGC   1014

1.5 PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA NA coding protein psRNATarget
XM_020552215.1
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  ||*||||*|||*||||||||||||
targets:4   UACCUCGACGCCAAGAUCUAUGGC   27

2.5 PREDICTED: Zea mays skin secretory protein xP2-like (LOC109945850), mRNA NA coding protein psRNATarget
XM_020544775.1
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  *=|*||||||=*||||||||||||
targets:142   GGGGUCGGCGUCAAGAUCUAUGGC   165

2.5 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA NA coding protein psRNATarget
XM_020538176.1
ncRNA:24   AUCGAGCCGCGAUUCUAGAUACCG   1
  *=|*|||||||*|||||||||||=
targets:349   GGGGUCGGCGCCAAGAUCUAUGGU   372

2.5 PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA NA coding protein psRNATarget
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