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BaseInfo

ncRNA ID novel_zma_miR7541
Species Zea mays
Class miRNA
Genome position Chr2:166411217-166411308 [+]
Reference genome RefGen_v4
Source SRR2647467
Length 24
Mature sequence(if miRNA) 69 - AAAAGAAACGGAGGGAGUACAACC - 92
Stem-loop(if miRNA) --GAU                                        A
     UACUCCCUCCGUUUCUUUUUAUUUGUCGCUGGAUAGUGUA U
     ||||||||||||||||||||||||||||||||||||||||
     AUGAGGGAGGCAAAGAAAAAUAAACAGCGACCUAUCACGU U
CCAAC                                        U
Stem-loop sequence GAUUACUCCCUCCGUUUCUUUUUAUUUGUCGCUGGAUAGUGUAAUUUUGCACUAUCCAGCGACAAAUAAAAAGAAACGGAGGGAGUACAACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ239400.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **||||||||||||||||||||||
targets:1   AUUUGUACUCCCUCCGUUUCUUUU   24

0.0 Sequence 5395 from Patent EP2985353 NA coding protein psRNATarget
HI407270.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **||||||||||||||||||||||
targets:1   AUUUGUACUCCCUCCGUUUCUUUU   24

0.0 Sequence 5395 from Patent EP2074227 NA coding protein psRNATarget
JB167731.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **||||||||||||||||||||||
targets:1   AUUUGUACUCCCUCCGUUUCUUUU   24

0.0 Sequence 5395 from Patent EP2559767 NA coding protein psRNATarget
EU973473.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **||||||||||||||||||||||
targets:644   ACUUGUACUCCCUCCGUUUCUUUU   667

0.0 Zea mays clone 399411 mRNA sequence NA coding protein psRNATarget
EU964901.1
ncRNA:24   CCAA--CAUGAGGGAGGCAAAGAAAA   1
  *|||--||||||||||||||||||||
targets:490   UGUUAAGUACUCCCUCCGUUUCUUUU   515

0.0 Zea mays clone 282450 mRNA sequence NA coding protein psRNATarget
NM_001151882.1
ncRNA:24   CCAA--CAUGAGGGAGGCAAAGAAAA   1
  *|||--||||||||||||||||||||
targets:562   UGUUAAGUACUCCCUCCGUUUCUUUU   587

0.0 Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA NA coding protein psRNATarget
EU974849.1
ncRNA:24   CCAA--CAUGAGGGAGGCAAAGAAAA   1
  *|||--||||||||||||||||||||
targets:562   UGUUAAGUACUCCCUCCGUUUCUUUU   587

0.0 Zea mays clone 459794 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008674191.2
ncRNA:24   CCAAC--AUGAGGGAGGCAAAGAAAA   1
  *||||--|||||||||||||||||||
targets:1144   UGUUGGAUACUCCCUCCGUUUCUUUU   1169

2.5 PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008669400.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  *|||*|||||||||||||||||||
targets:1595   AGUUAUACUCCCUCCGUUUCUUUU   1618

0.0 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA NA coding protein psRNATarget
JB169171.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  *|||||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6835 from Patent EP2559767 NA coding protein psRNATarget
LQ240840.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  *|||||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6835 from Patent EP2985353 NA coding protein psRNATarget
JB170657.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  *|||||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 8321 from Patent EP2559767 NA coding protein psRNATarget
HI408710.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  *|||||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6835 from Patent EP2074227 NA coding protein psRNATarget
LQ242326.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  *|||||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 8321 from Patent EP2985353 NA coding protein psRNATarget
HI410196.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  *|||||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 8321 from Patent EP2074227 NA coding protein psRNATarget
JB163817.1
ncRNA:24   CCAA-CAUGAGGGAGGCAAAGAAAA   1
  **||-||||||||||||||||||||
targets:5   UCUUCGUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1481 from Patent EP2559767 NA coding protein psRNATarget
LQ235409.1
ncRNA:24   CCAA-CAUGAGGGAGGCAAAGAAAA   1
  **||-||||||||||||||||||||
targets:5   AAUUAGUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1404 from Patent EP2985353 NA coding protein psRNATarget
LQ235486.1
ncRNA:24   CCAA-CAUGAGGGAGGCAAAGAAAA   1
  **||-||||||||||||||||||||
targets:5   UCUUCGUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1481 from Patent EP2985353 NA coding protein psRNATarget
JB163740.1
ncRNA:24   CCAA-CAUGAGGGAGGCAAAGAAAA   1
  **||-||||||||||||||||||||
targets:5   AAUUAGUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1404 from Patent EP2559767 NA coding protein psRNATarget
HI403279.1
ncRNA:24   CCAA-CAUGAGGGAGGCAAAGAAAA   1
  **||-||||||||||||||||||||
targets:5   AAUUAGUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1404 from Patent EP2074227 NA coding protein psRNATarget
HI403356.1
ncRNA:24   CCAA-CAUGAGGGAGGCAAAGAAAA   1
  **||-||||||||||||||||||||
targets:5   UCUUCGUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1481 from Patent EP2074227 NA coding protein psRNATarget
BT054612.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  *||*|||||||=||||||||||||
targets:1359   UGUAGUACUCCUUCCGUUUCUUUU   1382

1.5 Zea mays full-length cDNA clone ZM_BFc0190P19 mRNA, complete cds NA coding protein psRNATarget
LQ242145.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  *|||||||||||=|||||||||
targets:1   AUGUACUCCCUCUGUUUCUUUU   22

1.5 Sequence 8140 from Patent EP2985353 NA coding protein psRNATarget
HI410015.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  *|||||||||||=|||||||||
targets:1   AUGUACUCCCUCUGUUUCUUUU   22

1.5 Sequence 8140 from Patent EP2074227 NA coding protein psRNATarget
JB170476.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  *|||||||||||=|||||||||
targets:1   AUGUACUCCCUCUGUUUCUUUU   22

1.5 Sequence 8140 from Patent EP2559767 NA coding protein psRNATarget
HI403401.1
ncRNA:24   CCAACAU---GAGGGAGGCAAAGAAAA   1
  |*|||||---|||||||||||||||||
targets:3   GAUUGUAUUACUCCCUCCGUUUCUUUU   29

3.0 Sequence 1526 from Patent EP2074227 NA coding protein psRNATarget
LQ235531.1
ncRNA:24   CCAACAU---GAGGGAGGCAAAGAAAA   1
  |*|||||---|||||||||||||||||
targets:3   GAUUGUAUUACUCCCUCCGUUUCUUUU   29

3.0 Sequence 1526 from Patent EP2985353 NA coding protein psRNATarget
JB163862.1
ncRNA:24   CCAACAU---GAGGGAGGCAAAGAAAA   1
  |*|||||---|||||||||||||||||
targets:3   GAUUGUAUUACUCCCUCCGUUUCUUUU   29

3.0 Sequence 1526 from Patent EP2559767 NA coding protein psRNATarget
EZ112557.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  ||**||||||||||||||||||||
targets:43   GGAGGUACUCCCUCCGUUUCUUUU   66

0.0 TSA: Zea mays contig48218, mRNA sequence NA coding protein psRNATarget
EZ061772.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |*||*|||||||||||||||||||
targets:179   GAUUAUACUCCCUCCGUUUCUUUU   202

0.0 TSA: Zea mays contig62894, mRNA sequence NA coding protein psRNATarget
EU970288.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |**||||||||||=||||||||||
targets:1326   GCAUGUACUCCCUUCGUUUCUUUU   1349

1.5 Zea mays clone 343094 metal tolerance protein C3 mRNA, complete cds NA coding protein psRNATarget
HI407211.1
ncRNA:24   CCAACAUGAGGGAGGCAAAG-AAAA   1
  |||-||||||||||||||||-||||
targets:2   GGU-GUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5336 from Patent EP2074227 NA coding protein psRNATarget
JB167672.1
ncRNA:24   CCAACAUGAGGGAGGCAAAG-AAAA   1
  |||-||||||||||||||||-||||
targets:2   GGU-GUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5336 from Patent EP2559767 NA coding protein psRNATarget
LQ239341.1
ncRNA:24   CCAACAUGAGGGAGGCAAAG-AAAA   1
  |||-||||||||||||||||-||||
targets:2   GGU-GUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5336 from Patent EP2985353 NA coding protein psRNATarget
HI408623.1
ncRNA:24   CCAA-CAUGAGGGAGG-CAAAGAAAA   1
  *|||-|||||||||||-|||||||||
targets:2   AGUUAGUACUCCCUCCAGUUUCUUUU   27

3.0 Sequence 6748 from Patent EP2074227 NA coding protein psRNATarget
LQ240753.1
ncRNA:24   CCAA-CAUGAGGGAGG-CAAAGAAAA   1
  *|||-|||||||||||-|||||||||
targets:2   AGUUAGUACUCCCUCCAGUUUCUUUU   27

3.0 Sequence 6748 from Patent EP2985353 NA coding protein psRNATarget
JB169084.1
ncRNA:24   CCAA-CAUGAGGGAGG-CAAAGAAAA   1
  *|||-|||||||||||-|||||||||
targets:2   AGUUAGUACUCCCUCCAGUUUCUUUU   27

3.0 Sequence 6748 from Patent EP2559767 NA coding protein psRNATarget
LQ235499.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **||*|||||||||||||||||||
targets:6   ACUUAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1494 from Patent EP2985353 NA coding protein psRNATarget
JB163830.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **||*|||||||||||||||||||
targets:6   ACUUAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1494 from Patent EP2559767 NA coding protein psRNATarget
HI403369.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **||*|||||||||||||||||||
targets:6   ACUUAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1494 from Patent EP2074227 NA coding protein psRNATarget
XM_020549872.1
ncRNA:24   CCAACAUGAGGGAGGCAAAG-AAAA   1
  |||-||||||||||||||||-||||
targets:1261   GGU-GUACUCCCUCCGUUUCGUUUU   1284

3.0 PREDICTED: Zea mays uncharacterized LOC100382893 (LOC100382893), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001175582.1
ncRNA:24   CCAACAUGAGGGAGGCAAAG-AAAA   1
  |||-||||||||||||||||-||||
targets:1428   GGU-GUACUCCCUCCGUUUCGUUUU   1451

3.0 Zea mays uncharacterized LOC100382893 (LOC100382893), mRNA NA coding protein psRNATarget
BT065656.1
ncRNA:24   CCAACAUGAGGGAGGCAAAG-AAAA   1
  |||-||||||||||||||||-||||
targets:1428   GGU-GUACUCCCUCCGUUUCGUUUU   1451

3.0 Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds NA coding protein psRNATarget
LQ242091.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  **||||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 8086 from Patent EP2985353 NA coding protein psRNATarget
HI409961.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  **||||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 8086 from Patent EP2074227 NA coding protein psRNATarget
LQ241075.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  **||||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7070 from Patent EP2985353 NA coding protein psRNATarget
JB170422.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  **||||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 8086 from Patent EP2559767 NA coding protein psRNATarget
JB169406.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  **||||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7070 from Patent EP2559767 NA coding protein psRNATarget
HI408945.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  **||||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7070 from Patent EP2074227 NA coding protein psRNATarget
BT024153.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  ****||||||||||||||||||||
targets:185   UCACGUACUCCCUCCGUUUCUUUU   208

0.0 Zea mays clone EL01N0438E01 mRNA sequence NA coding protein psRNATarget
XM_008656936.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  ****||||||||||||||||||||
targets:159   AAAAGUACUCCCUCCGUUUCUUUU   182

0.0 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008677351.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  ****||||||||||||||||||||
targets:2052   AAAGGUACUCCCUCCGUUUCUUUU   2075

0.0 PREDICTED: Zea mays hypothetical protein (LOC103651662), mRNA NA coding protein psRNATarget
XM_020537567.1
ncRNA:24   CCAACA-UGAGGGAGGCAAAGAAAA   1
  *|||*|-||||||||||||||||||
targets:1446   AGUUAUUACUCCCUCCGUUUCUUUU   1470

2.0 PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA NA coding protein psRNATarget
JB170160.1
ncRNA:21   ACA-UGAGGGAGGCAAAGAAAA   1
  |||-||||||||||||||||||
targets:1   UGUUACUCCCUCCGUUUCUUUU   22

2.0 Sequence 7824 from Patent EP2559767 NA coding protein psRNATarget
LQ241829.1
ncRNA:21   ACA-UGAGGGAGGCAAAGAAAA   1
  |||-||||||||||||||||||
targets:1   UGUUACUCCCUCCGUUUCUUUU   22

2.0 Sequence 7824 from Patent EP2985353 NA coding protein psRNATarget
HI409699.1
ncRNA:21   ACA-UGAGGGAGGCAAAGAAAA   1
  |||-||||||||||||||||||
targets:1   UGUUACUCCCUCCGUUUCUUUU   22

2.0 Sequence 7824 from Patent EP2074227 NA coding protein psRNATarget
HI403287.1
ncRNA:24   CCAAC-AUGAGGGAGGCAAAGAAAA   1
  ***||-|||||||||||||||||||
targets:5   AAAUGAUACUCCCUCCGUUUCUUUU   29

2.0 Sequence 1412 from Patent EP2074227 NA coding protein psRNATarget
JB163748.1
ncRNA:24   CCAAC-AUGAGGGAGGCAAAGAAAA   1
  ***||-|||||||||||||||||||
targets:5   AAAUGAUACUCCCUCCGUUUCUUUU   29

2.0 Sequence 1412 from Patent EP2559767 NA coding protein psRNATarget
LQ235417.1
ncRNA:24   CCAAC-AUGAGGGAGGCAAAGAAAA   1
  ***||-|||||||||||||||||||
targets:5   AAAUGAUACUCCCUCCGUUUCUUUU   29

2.0 Sequence 1412 from Patent EP2985353 NA coding protein psRNATarget
XM_008664463.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|*||||||||||=|||||||||
targets:88   UAUAGUACUCCCUCUGUUUCUUUU   111

1.5 PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008664460.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|*||||||||||=|||||||||
targets:108   UAUAGUACUCCCUCUGUUUCUUUU   131

1.5 PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546695.1
ncRNA:24   CCA-------ACAUGAGGGAGGCAAAGAAAA   1
  |||-------|*|||||||||||||||||||
targets:2193   GGUCAAAUUAUAUACUCCCUCCGUUUCUUUU   2223

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X13, mRNA NA coding protein psRNATarget
XM_008666445.2
ncRNA:24   CCA-------ACAUGAGGGAGGCAAAGAAAA   1
  |||-------|*|||||||||||||||||||
targets:2193   GGUCAAAUUAUAUACUCCCUCCGUUUCUUUU   2223

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X14, mRNA NA coding protein psRNATarget
XM_020546694.1
ncRNA:24   CCA-------ACAUGAGGGAGGCAAAGAAAA   1
  |||-------|*|||||||||||||||||||
targets:2193   GGUCAAAUUAUAUACUCCCUCCGUUUCUUUU   2223

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020546685.1
ncRNA:24   CCA-------ACAUGAGGGAGGCAAAGAAAA   1
  |||-------|*|||||||||||||||||||
targets:2214   GGUCAAAUUAUAUACUCCCUCCGUUUCUUUU   2244

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546687.1
ncRNA:24   CCA-------ACAUGAGGGAGGCAAAGAAAA   1
  |||-------|*|||||||||||||||||||
targets:2214   GGUCAAAUUAUAUACUCCCUCCGUUUCUUUU   2244

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020546686.1
ncRNA:24   CCA-------ACAUGAGGGAGGCAAAGAAAA   1
  |||-------|*|||||||||||||||||||
targets:2214   GGUCAAAUUAUAUACUCCCUCCGUUUCUUUU   2244

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546691.1
ncRNA:24   CCA-------ACAUGAGGGAGGCAAAGAAAA   1
  |||-------|*|||||||||||||||||||
targets:2193   GGUCAAAUUAUAUACUCCCUCCGUUUCUUUU   2223

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020546689.1
ncRNA:24   CCA-------ACAUGAGGGAGGCAAAGAAAA   1
  |||-------|*|||||||||||||||||||
targets:2152   GGUCAAAUUAUAUACUCCCUCCGUUUCUUUU   2182

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020546683.1
ncRNA:24   CCA-------ACAUGAGGGAGGCAAAGAAAA   1
  |||-------|*|||||||||||||||||||
targets:2207   GGUCAAAUUAUAUACUCCCUCCGUUUCUUUU   2237

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546684.1
ncRNA:24   CCA-------ACAUGAGGGAGGCAAAGAAAA   1
  |||-------|*|||||||||||||||||||
targets:2232   GGUCAAAUUAUAUACUCCCUCCGUUUCUUUU   2262

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546692.1
ncRNA:24   CCA-------ACAUGAGGGAGGCAAAGAAAA   1
  |||-------|*|||||||||||||||||||
targets:2193   GGUCAAAUUAUAUACUCCCUCCGUUUCUUUU   2223

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020546693.1
ncRNA:24   CCA-------ACAUGAGGGAGGCAAAGAAAA   1
  |||-------|*|||||||||||||||||||
targets:2131   GGUCAAAUUAUAUACUCCCUCCGUUUCUUUU   2161

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X11, mRNA NA coding protein psRNATarget
BT065536.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  ****|||||||||||||||=||||
targets:783   UAAAGUACUCCCUCCGUUUUUUUU   806

1.5 Zea mays full-length cDNA clone ZM_BFb0224G04 mRNA, complete cds NA coding protein psRNATarget
NM_001328133.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |***|||||||||||||||=||||
targets:759   GUACGUACUCCCUCCGUUUUUUUU   782

1.5 Zea mays Methionyl-tRNA synthetase (LOC100384454), mRNA NA coding protein psRNATarget
BT070166.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |***|||||||||||||||=||||
targets:759   GUACGUACUCCCUCCGUUUUUUUU   782

1.5 Zea mays full-length cDNA clone ZM_BFc0141C23 mRNA, complete cds NA coding protein psRNATarget
NM_001156378.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  ****|||||||||||||||=||||
targets:841   UAAAGUACUCCCUCCGUUUUUUUU   864

1.5 Zea mays ribulose-phosphate 3-epimerase (LOC100283478), mRNA NA coding protein psRNATarget
EU964879.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  ****|||||||||||||||=||||
targets:842   UAAAGUACUCCCUCCGUUUUUUUU   865

1.5 Zea mays clone 282287 ribulose-phosphate 3-epimerase mRNA, complete cds NA coding protein psRNATarget
EU971616.1
ncRNA:24   CCAA-----CAUGAGGGAGGCAAAG-AAAA   1
  *|||-----||||||||||||||||-||||
targets:1152   CGUUCCUUGGUACUCCCUCCGUUUCGUUUU   1181

3.0 Zea mays clone 368130 rieske domain containing protein mRNA, complete cds NA coding protein psRNATarget
XM_020546173.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  ***|*|||||||||||||||||||
targets:1458   AUAUAUACUCCCUCCGUUUCUUUU   1481

0.0 PREDICTED: Zea mays myb-related protein P-like (LOC109943268), mRNA NA coding protein psRNATarget
HI409615.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  ***|||||||||||||||||||
targets:1   AACUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7740 from Patent EP2074227 NA coding protein psRNATarget
JB170076.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  ***|||||||||||||||||||
targets:1   AACUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7740 from Patent EP2559767 NA coding protein psRNATarget
LQ241745.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  ***|||||||||||||||||||
targets:1   AACUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7740 from Patent EP2985353 NA coding protein psRNATarget
JB169079.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  ***|||||||||||||||||||
targets:1   AAUUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6743 from Patent EP2559767 NA coding protein psRNATarget
HI408618.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  ***|||||||||||||||||||
targets:1   AAUUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6743 from Patent EP2074227 NA coding protein psRNATarget
HI408570.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  |**|||||||||||||||||||
targets:1   UACUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6695 from Patent EP2074227 NA coding protein psRNATarget
HI409616.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  ***|||||||||||||||||||
targets:1   AACUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7741 from Patent EP2074227 NA coding protein psRNATarget
JB169789.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  ***|||||||||||||||||||
targets:1   CCAUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7453 from Patent EP2559767 NA coding protein psRNATarget
HI409328.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  ***|||||||||||||||||||
targets:1   CCAUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7453 from Patent EP2074227 NA coding protein psRNATarget
JB169031.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  |**|||||||||||||||||||
targets:1   UACUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6695 from Patent EP2559767 NA coding protein psRNATarget
LQ240748.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  ***|||||||||||||||||||
targets:1   AAUUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6743 from Patent EP2985353 NA coding protein psRNATarget
JB170077.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  ***|||||||||||||||||||
targets:1   AACUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7741 from Patent EP2559767 NA coding protein psRNATarget
LQ241458.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  ***|||||||||||||||||||
targets:1   CCAUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7453 from Patent EP2985353 NA coding protein psRNATarget
LQ240700.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  |**|||||||||||||||||||
targets:1   UACUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6695 from Patent EP2985353 NA coding protein psRNATarget
LQ241746.1
ncRNA:22   AACAUGAGGGAGGCAAAGAAAA   1
  ***|||||||||||||||||||
targets:1   AACUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7741 from Patent EP2985353 NA coding protein psRNATarget
JB163755.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  *|***|||||||||||||||||||
targets:6   AGAACUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1419 from Patent EP2559767 NA coding protein psRNATarget
LQ235424.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  *|***|||||||||||||||||||
targets:6   AGAACUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1419 from Patent EP2985353 NA coding protein psRNATarget
HI403294.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  *|***|||||||||||||||||||
targets:6   AGAACUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1419 from Patent EP2074227 NA coding protein psRNATarget
HI403399.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|**|||||||||||||||||||
targets:6   AUUCAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1524 from Patent EP2074227 NA coding protein psRNATarget
LQ235529.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|**|||||||||||||||||||
targets:6   AUUCAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1524 from Patent EP2985353 NA coding protein psRNATarget
JB163860.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|**|||||||||||||||||||
targets:6   AUUCAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1524 from Patent EP2559767 NA coding protein psRNATarget
BT060817.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  *****|||||||||||||||||||
targets:225   ACCAAUACUCCCUCCGUUUCUUUU   248

0.0 Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds NA coding protein psRNATarget
BT062074.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |*|**|||||||||||||||||||
targets:1132   GCUACUACUCCCUCCGUUUCUUUU   1155

0.0 Zea mays full-length cDNA clone ZM_BFb0212O02 mRNA, complete cds NA coding protein psRNATarget
XM_020541158.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|**|||||||||||||||||||
targets:1023   CUUCUUACUCCCUCCGUUUCUUUU   1046

0.0 PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X3, mRNA NA coding protein psRNATarget
EU953599.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |****|||||||||||||||||||
targets:1220   GCCACUACUCCCUCCGUUUCUUUU   1243

0.0 Zea mays clone 1437867 F-box domain containing protein mRNA, complete cds NA coding protein psRNATarget
XM_020541157.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|**|||||||||||||||||||
targets:1025   CUUCUUACUCCCUCCGUUUCUUUU   1048

0.0 PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655254.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|**|||||||||||||||||||
targets:1044   CUUCUUACUCCCUCCGUUUCUUUU   1067

0.0 PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008682276.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |*|**|||||||||||||||||||
targets:1215   GCUACUACUCCCUCCGUUUCUUUU   1238

0.0 PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X2, mRNA NA coding protein psRNATarget
EU973774.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |*|**|||||||||||||||||||
targets:1230   GCUACUACUCCCUCCGUUUCUUUU   1253

0.0 Zea mays clone 410704 F-box domain containing protein mRNA, complete cds NA coding protein psRNATarget
XM_008671993.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|**|||||||||||||||||||
targets:1161   CAUAUUACUCCCUCCGUUUCUUUU   1184

0.0 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001156655.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|**|||||||||||||||||||
targets:1283   UCUAAUACUCCCUCCGUUUCUUUU   1306

0.0 Zea mays wax synthase (LOC100283756), mRNA NA coding protein psRNATarget
EU965844.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|**|||||||||||||||||||
targets:1283   UCUAAUACUCCCUCCGUUUCUUUU   1306

0.0 Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds NA coding protein psRNATarget
XM_008682289.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |*|**|||||||||||||||||||
targets:1244   GCUACUACUCCCUCCGUUUCUUUU   1267

0.0 PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008647346.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|**|||||||||||||||||||
targets:136   AUUAAUACUCCCUCCGUUUCUUUU   159

0.0 PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA NA coding protein psRNATarget
NM_001158647.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |*|**|||||||||||||||||||
targets:1296   GCUACUACUCCCUCCGUUUCUUUU   1319

0.0 Zea mays F-box domain containing protein (LOC100285757), mRNA NA coding protein psRNATarget
EU973763.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |*|**|||||||||||||||||||
targets:1298   GCUACUACUCCCUCCGUUUCUUUU   1321

0.0 Zea mays clone 409560 F-box domain containing protein mRNA, complete cds NA coding protein psRNATarget
XM_008671992.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|**|||||||||||||||||||
targets:1267   CAUAUUACUCCCUCCGUUUCUUUU   1290

0.0 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008682282.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |*|**|||||||||||||||||||
targets:1404   GCUACUACUCCCUCCGUUUCUUUU   1427

0.0 PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020542418.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|**|||||||||||||||||||
targets:1972   UAUACUACUCCCUCCGUUUCUUUU   1995

0.0 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020553332.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |*|**|||||||||||||||||||
targets:1993   GCUACUACUCCCUCCGUUUCUUUU   2016

0.0 PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020553342.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |*|**|||||||||||||||||||
targets:2024   GCUACUACUCCCUCCGUUUCUUUU   2047

0.0 PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008658752.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|**|||||||||||||||||||
targets:2039   UAUACUACUCCCUCCGUUUCUUUU   2062

0.0 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020553327.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |*|**|||||||||||||||||||
targets:2106   GCUACUACUCCCUCCGUUUCUUUU   2129

0.0 PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020553339.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  |*|**|||||||||||||||||||
targets:2137   GCUACUACUCCCUCCGUUUCUUUU   2160

0.0 PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X5, mRNA NA coding protein psRNATarget
EU947026.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  *|||*||||=|||||*||||||||
targets:696   UGUUCUACUUCCUCCCUUUCUUUU   719

2.5 Zea mays clone 326264 mRNA sequence NA coding protein psRNATarget
BT088237.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  *|||*||||=|||||*||||||||
targets:1117   UGUUCUACUUCCUCCCUUUCUUUU   1140

2.5 Zea mays full-length cDNA clone ZM_BFc0088M05 mRNA, complete cds NA coding protein psRNATarget
NM_001150567.2
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  *|||*||||=|||||*||||||||
targets:1130   UGUUCUACUUCCUCCCUUUCUUUU   1153

2.5 Zea mays hypothetical protein (LOC100276863), mRNA NA coding protein psRNATarget
EU965277.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  *|||*||||=|||||*||||||||
targets:1130   UGUUCUACUUCCUCCCUUUCUUUU   1153

2.5 Zea mays clone 285009 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
HI409234.1
ncRNA:21   ACAUGAGGGAGGCAAAG-AAAA   1
  *||||||||||||||||-||||
targets:1   GGUACUCCCUCCGUUUCGUUUU   22

3.0 Sequence 7359 from Patent EP2074227 NA coding protein psRNATarget
LQ241364.1
ncRNA:21   ACAUGAGGGAGGCAAAG-AAAA   1
  *||||||||||||||||-||||
targets:1   GGUACUCCCUCCGUUUCGUUUU   22

3.0 Sequence 7359 from Patent EP2985353 NA coding protein psRNATarget
JB169695.1
ncRNA:21   ACAUGAGGGAGGCAAAG-AAAA   1
  *||||||||||||||||-||||
targets:1   GGUACUCCCUCCGUUUCGUUUU   22

3.0 Sequence 7359 from Patent EP2559767 NA coding protein psRNATarget
HI407269.1
ncRNA:24   CCAACAUGAGGGAGGCAAAG-AAAA   1
  ****||||||||||||||||-||||
targets:1   UACGGUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5394 from Patent EP2074227 NA coding protein psRNATarget
LQ239399.1
ncRNA:24   CCAACAUGAGGGAGGCAAAG-AAAA   1
  ****||||||||||||||||-||||
targets:1   UACGGUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5394 from Patent EP2985353 NA coding protein psRNATarget
JB167730.1
ncRNA:24   CCAACAUGAGGGAGGCAAAG-AAAA   1
  ****||||||||||||||||-||||
targets:1   UACGGUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5394 from Patent EP2559767 NA coding protein psRNATarget
LQ239360.1
ncRNA:24   CCAACAUGAGGGAGGCAAAG-AAAA   1
  ****||||||||||||||||-||||
targets:1   UAAAGUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5355 from Patent EP2985353 NA coding protein psRNATarget
HI407230.1
ncRNA:24   CCAACAUGAGGGAGGCAAAG-AAAA   1
  ****||||||||||||||||-||||
targets:1   UAAAGUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5355 from Patent EP2074227 NA coding protein psRNATarget
JB167691.1
ncRNA:24   CCAACAUGAGGGAGGCAAAG-AAAA   1
  ****||||||||||||||||-||||
targets:1   UAAAGUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5355 from Patent EP2559767 NA coding protein psRNATarget
EZ517015.1
ncRNA:24   CCAACAUGAGGGAGGCAAAGAAAA   1
  **|*|||||||||||||||=|||*
targets:51   UAUGGUACUCCCUCCGUUUUUUUA   74

2.5 TSA: Zea mays cultivar W22 CL412Contig1.betc, mRNA sequence NA coding protein psRNATarget
NM_001153043.1
ncRNA:24   CCAACAUGAGGGAGGCAAAG-AAAA   1
  *|**||||||||||||||||-||||
targets:830   CGAGGUACUCCCUCCGUUUCGUUUU   854

3.0 Zea mays uncharacterized LOC100280105 (LOC100280105), mRNA NA coding protein psRNATarget
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