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BaseInfo

ncRNA ID	novel_zma_miR7540
Species	Zea mays
Class	miRNA
Genome position	Chr2:166258882-166258957 [+]
Reference genome	RefGen_v4
Source	SRR2647467
Length	24
Mature sequence(if miRNA)	1 - GACUCAAUACUCGUGAGAAUGUUG - 24
Stem-loop(if miRNA)	--  -        UC  G   A    ----     AU       GA CUCAAUAC  GU AGA UGUU    GAUAA  UCCGG   || ||||||||  || ||| ||||    |||||  ||||C   CU GAGUUGUG  CA UCU ACAG    CUGUU  GGGCU UU  A        GA  G   -    GCUG     -C
Stem-loop sequence	GACUCAAUACUCGUGAGAAUGUUGAUAAAUUCCGGCUCGGGCUUGUCGUCGGACAUCUGACAGGUGUUGAGAUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT036558.1	ncRNA:24   GUUGUAAGAGUGCUCAUAACUCAG   1   ||=||||||=|||||||||||||| targets:1146   CAGCAUUCUUACGAGUAUUGAGUC   1169 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0123H20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165850.1	ncRNA:24   GUUGUAAGAGUGCUCAUAACUCAG   1   ||=|||||||=||||||||||||| targets:1533   CAGCAUUCUCGCGAGUAUUGAGUC   1556 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304414 (LOC100304414), mRNA	NA	coding protein	psRNATarget
BT061097.1	ncRNA:24   GUUGUAAGAGUGCUCAUAACUCAG   1   ||=|||||||=||||||||||||| targets:1533   CAGCAUUCUCGCGAGUAUUGAGUC   1556 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0100G17 mRNA, complete cds	NA	coding protein	psRNATarget
EU943183.1	ncRNA:24   GUUGUAAGAGUGCUCAUAACUCAG   1   ||||||||||||*||||||||||| targets:1459   CAACAUUCUCACAAGUAUUGAGUC   1482 Target Full Sequence	1.5	Zea mays clone 1580845 mRNA sequence	NA	coding protein	psRNATarget
NM_001153253.1	ncRNA:24   GUUGUAAGAGUGCUCAUAACUCAG   1   |||=||||||||*||||||||||| targets:1769   CAAUAUUCUCACAAGUAUUGAGUC   1792 Target Full Sequence	1.5	Zea mays uncharacterized LOC100280327 (LOC100280327), mRNA	NA	coding protein	psRNATarget
BT056017.1	ncRNA:24   GUUGUAAGAGUGCUCAUAACUCAG   1   |||=||||||||*||||||||||| targets:1769   CAAUAUUCUCACAAGUAUUGAGUC   1792 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0130K21 mRNA, complete cds	NA	coding protein	psRNATarget
EU942761.1	ncRNA:24   GUUGUAAGAGUGCUCAUAACUCAG   1   ||=|||||*=|||||||||||||| targets:230   CAGCAUUCGUACGAGUAUUGAGUC   253 Target Full Sequence	2.0	Zea mays clone 1534785 mRNA sequence	NA	coding protein	psRNATarget
BT036604.1	ncRNA:24   GUUGUAAGAGUGCUCAUAACUCAG   1   |*=||||||=|||||||||||||| targets:1271   CUGCAUUCUUACGAGUAUUGAGUC   1294 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0125I03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139198.1	ncRNA:24   GUUGUAAGAGUGCUCAUAACUCAG   1   |*=||||||=|||||||||||||| targets:1271   CUGCAUUCUUACGAGUAUUGAGUC   1294 Target Full Sequence	1.0	Zea mays uncharacterized LOC100194147 (LOC100194147), mRNA	NA	coding protein	psRNATarget
EU947674.1	ncRNA:24   GUUGUAAGAGUGCUCAUAACUCAG   1   |*=||||||=|||||||||||||| targets:1259   CUGCAUUCUUACGAGUAUUGAGUC   1282 Target Full Sequence	1.0	Zea mays clone 351819 mRNA sequence	NA	coding protein	psRNATarget
BT067973.1	ncRNA:24   GUUGUAAGAGUGCUCAUAACUCAG   1   ||=|||||*=|||||||||||||* targets:1459   CAGCAUUCGUACGAGUAUUGAGUA   1482 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0005F12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176302.1	ncRNA:24   GUUGUAAGAGUGCUCAUAACUCAG   1   ||=|||||*=|||||||||||||* targets:1459   CAGCAUUCGUACGAGUAUUGAGUA   1482 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383658 (LOC100383658), mRNA	NA	coding protein	psRNATarget