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BaseInfo

ncRNA ID	novel_zma_miR7537
Species	Zea mays
Class	miRNA
Genome position	Chr2:135649617-135649728 [+]
Reference genome	RefGen_v4
Source	SRR2647467
Length	24
Mature sequence(if miRNA)	1 - GAGCUUCUUUGCCGAGUGCCAGGA - 24
Stem-loop(if miRNA)	C       C         G     C        A          U   UG U GAG UUCUUUG CGAGUGCCA GACUA AGCACUCG CAAAGAAGAU UAU  G U ||| ||||||| ||||||||| ||||| |||||||| |||||||||| |||  | CUC AAGAAAC GCUCACGGU CUGGU UCGUGAGC GUUUCUUCUG GUG  C C    C       A         A     A        C          U   GA U
Stem-loop sequence	GAGCUUCUUUGCCGAGUGCCAGGACUACAGCACUCGACAAAGAAGAUUUAUUGGUUCUCAGGUGUGUCUUCUUUGCCGAGUGCUAUGGUCAUGGCACUCGACAAAGAACCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167154.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   |=|*|||||||||||||||||||| targets:7   UUCGGGCACUCGGCAAAGAAGCUC   30 Target Full Sequence	0.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   |=|*|||||||||||||||||||| targets:7   UUCGGGCACUCGGCAAAGAAGCUC   30 Target Full Sequence	0.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   |=|*|||||||||||||||||||| targets:7   UUCGGGCACUCGGCAAAGAAGCUC   30 Target Full Sequence	0.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239258.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUC-GAG   1   ||*||||||||||||||||||-||| targets:37   UCAUGGCACUCGGCAAAGAAGGCUC   61 Target Full Sequence	3.0	Sequence 5253 from Patent EP2985353	NA	coding protein	psRNATarget
JB167589.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUC-GAG   1   ||*||||||||||||||||||-||| targets:37   UCAUGGCACUCGGCAAAGAAGGCUC   61 Target Full Sequence	3.0	Sequence 5253 from Patent EP2559767	NA	coding protein	psRNATarget
HI407128.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUC-GAG   1   ||*||||||||||||||||||-||| targets:37   UCAUGGCACUCGGCAAAGAAGGCUC   61 Target Full Sequence	3.0	Sequence 5253 from Patent EP2074227	NA	coding protein	psRNATarget
BT042352.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   |==|*||||||||||||||||||| targets:1242   UUUUUGCACUCGGCAAAGAAGCUC   1265 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   |==|*||||||||||||||||||| targets:1292   UUUUUGCACUCGGCAAAGAAGCUC   1315 Target Full Sequence	0.0	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   *=||||||||||||||||||||*| targets:203   CUCUGGCACUCGGCAAAGAAGCAC   226 Target Full Sequence	1.5	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
JB167423.1	ncRNA:20   CCGUGAGCCGUUUCUUCGAG   1   |||||||||||||||=|||= targets:1   GGCACUCGGCAAAGAGGCUU   20 Target Full Sequence	2.5	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   *=||||||||||||||||||||*| targets:203   CUCUGGCACUCGGCAAAGAAGCAC   226 Target Full Sequence	1.5	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
HI406962.1	ncRNA:20   CCGUGAGCCGUUUCUUCGAG   1   |||||||||||||||=|||= targets:1   GGCACUCGGCAAAGAGGCUU   20 Target Full Sequence	2.5	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   *=||||||||||||||||||||*| targets:203   CUCUGGCACUCGGCAAAGAAGCAC   226 Target Full Sequence	1.5	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:20   CCGUGAGCCGUUUCUUCGAG   1   |||||||||||||||=|||= targets:1   GGCACUCGGCAAAGAGGCUU   20 Target Full Sequence	2.5	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238871.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCG-AG   1   *==|||||||||||||||||||-|| targets:118   CUUUGGCACUCGGCAAAGAAGCCUC   142 Target Full Sequence	3.0	Sequence 4866 from Patent EP2985353	NA	coding protein	psRNATarget
HI406741.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCG-AG   1   *==|||||||||||||||||||-|| targets:118   CUUUGGCACUCGGCAAAGAAGCCUC   142 Target Full Sequence	3.0	Sequence 4866 from Patent EP2074227	NA	coding protein	psRNATarget
JB167202.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCG-AG   1   *==|||||||||||||||||||-|| targets:118   CUUUGGCACUCGGCAAAGAAGCCUC   142 Target Full Sequence	3.0	Sequence 4866 from Patent EP2559767	NA	coding protein	psRNATarget
JB167569.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   **||||||||||||||||||||** targets:32   CACUGGCACUCGGCAAAGAAGCAA   55 Target Full Sequence	2.5	Sequence 5233 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239238.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   **||||||||||||||||||||** targets:32   CACUGGCACUCGGCAAAGAAGCAA   55 Target Full Sequence	2.5	Sequence 5233 from Patent EP2985353	NA	coding protein	psRNATarget
HI407108.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   **||||||||||||||||||||** targets:32   CACUGGCACUCGGCAAAGAAGCAA   55 Target Full Sequence	2.5	Sequence 5233 from Patent EP2074227	NA	coding protein	psRNATarget
HI409696.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCG-AG   1   *=*|||||||||||||||||||-|| targets:21   AUGUGGCACUCGGCAAAGAAGCCUC   45 Target Full Sequence	3.0	Sequence 7821 from Patent EP2074227	NA	coding protein	psRNATarget
JB170157.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCG-AG   1   *=*|||||||||||||||||||-|| targets:21   AUGUGGCACUCGGCAAAGAAGCCUC   45 Target Full Sequence	3.0	Sequence 7821 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241826.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCG-AG   1   *=*|||||||||||||||||||-|| targets:21   AUGUGGCACUCGGCAAAGAAGCCUC   45 Target Full Sequence	3.0	Sequence 7821 from Patent EP2985353	NA	coding protein	psRNATarget
EZ067174.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   **||||||||||||||||||*||= targets:17   GACUGGCACUCGGCAAAGAACCUU   40 Target Full Sequence	2.5	TSA: Zea mays contig02808, mRNA sequence	NA	coding protein	psRNATarget
XM_008654748.2	ncRNA:24   AGGA--CCGUGAGCCGUUUCUUCGAG   1   *|||--||||||||||||||=||||* targets:49   GCCUAAGGCACUCGGCAAAGGAGCUG   74 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103633067 (LOC103633067), mRNA	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   ||--|||||||||||||||=|||= targets:1082   UC--GGCACUCGGCAAAGAGGCUU   1103 Target Full Sequence	2.5	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB167233.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   |*|*||||||||*||||||||||| targets:37   UACGGGCACUCGACAAAGAAGCUC   60 Target Full Sequence	1.5	Sequence 4897 from Patent EP2559767	NA	coding protein	psRNATarget
HI406772.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   |*|*||||||||*||||||||||| targets:37   UACGGGCACUCGACAAAGAAGCUC   60 Target Full Sequence	1.5	Sequence 4897 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238902.1	ncRNA:24   AGGACCGUGAGCCGUUUCUUCGAG   1   |*|*||||||||*||||||||||| targets:37   UACGGGCACUCGACAAAGAAGCUC   60 Target Full Sequence	1.5	Sequence 4897 from Patent EP2985353	NA	coding protein	psRNATarget