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BaseInfo

ncRNA ID	novel_zma_miR7531
Species	Zea mays
Class	miRNA
Genome position	Chr2:229077988-229078095 [-]
Reference genome	RefGen_v4
Source	SRR2647467
Length	24
Mature sequence(if miRNA)	85 - GUUACACUAAUCCAGAAGGGGAUU - 108
Stem-loop(if miRNA)	--            C      G          C              A     U   GUUACACUAAUC AGAAGG GAUUGGAGGG AUUAAAUCCUCUCC AGUCA U   |||||||||||| |||||| |||||||||| |||||||||||||| |||||   CAAUGUGGUUAG UCUUCC CUAACUUCCC UAAUUUAGGGGAGG UCAGU U AC            A      G          C              A     U
Stem-loop sequence	GUUACACUAAUCCAGAAGGGGAUUGGAGGGCAUUAAAUCCUCUCCAAGUCAUUUUUGACUAGGAGGGGAUUUAAUCCCCUUCAAUCGCCUUCUAGAUUGGUGUAACCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548160.1	ncRNA:24   UUAGGGGAAGACCUAAUCACAUUG   1   ||||||||||||||||=||||||| targets:4806   AAUCCCCUUCUGGAUUGGUGUAAC   4829 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   UUAGGGGAAGACCUAAUCACAUUG   1   ||||||||||||||||=||||||| targets:5033   AAUCCCCUUCUGGAUUGGUGUAAC   5056 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ093244.1	ncRNA:24   UUAGGGGAAGACCUAAUCACAUUG   1   |||||||||=||||||=||||||| targets:75   AAUCCCCUUUUGGAUUGGUGUAAC   98 Target Full Sequence	2.5	TSA: Zea mays contig28894, mRNA sequence	NA	coding protein	psRNATarget
HI403028.1	ncRNA:24   UUAGGGGAAGACCUAAUCACAUUG   1   |||||||*||||||||=||||||| targets:92   AAUCCCCAUCUGGAUUGGUGUAAC   115 Target Full Sequence	2.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:24   UUAGGGGAAGACCUAAUCACAUUG   1   |||||||*||||||||=||||||| targets:92   AAUCCCCAUCUGGAUUGGUGUAAC   115 Target Full Sequence	2.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
JB163489.1	ncRNA:24   UUAGGGGAAGACCUAAUCACAUUG   1   |||||||*||||||||=||||||| targets:92   AAUCCCCAUCUGGAUUGGUGUAAC   115 Target Full Sequence	2.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
BT041883.1	ncRNA:24   UUAGGGGAAGACCUAAUCACAUUG   1   |||||||||*||||||=||||||| targets:878   AAUCCCCUUAUGGAUUGGUGUAAC   901 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073E14 mRNA, complete cds	NA	coding protein	psRNATarget
BT062257.1	ncRNA:24   UUAGGGGAAGACCUAAUCACAUUG   1   |||||||||*||||||=||||||| targets:1177   AAUCCCCUUAUGGAUUGGUGUAAC   1200 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0234J14 mRNA, complete cds	NA	coding protein	psRNATarget
EU975659.1	ncRNA:24   UUAGGGGAAGACCUAAUCACAUUG   1   |||||||||*||||||=||||||| targets:2206   AAUCCCCUUAUGGAUUGGUGUAAC   2229 Target Full Sequence	2.5	Zea mays clone 495563 ankyrin protein kinase-like mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158998.2	ncRNA:24   UUAGGGGAAGACCUAAUCACAUUG   1   |||||||||*||||||=||||||| targets:2207   AAUCCCCUUAUGGAUUGGUGUAAC   2230 Target Full Sequence	2.5	Zea mays Ankyrin protein kinase-like (LOC100279910), mRNA	NA	coding protein	psRNATarget