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BaseInfo

ncRNA ID	novel_zma_miR7530
Species	Zea mays
Class	miRNA
Genome position	Chr2:210669746-210669796 [+]
Reference genome	RefGen_v4
Source	SRR2647467
Length	24
Mature sequence(if miRNA)	1 - CUAAGAUCUAUGGCGUCGAGUCGU - 24
Stem-loop(if miRNA)	--   A -A  U            CG   CUA G  UC AUGGCGUCGAGU  U   ||| |  || ||||||||||||  G   GAU C  AG UACCGCGGCUCG  U GC   A CG  -            AU
Stem-loop sequence	CUAAGAUCUAUGGCGUCGAGUCGUGUUAGCUCGGCGCCAUGAGCCAUAGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238112.1	ncRNA:24   UGCU-GAGCUGCGGUAUCUAGAAUC   1   *|||-||||=|||||||||||||=| targets:63   CCGAACUCGGCGCCAUAGAUCUUGG   87 Target Full Sequence	2.5	Sequence 4107 from Patent EP2985353	NA	coding protein	psRNATarget
JB166443.1	ncRNA:24   UGCU-GAGCUGCGGUAUCUAGAAUC   1   *|||-||||=|||||||||||||=| targets:63   CCGAACUCGGCGCCAUAGAUCUUGG   87 Target Full Sequence	2.5	Sequence 4107 from Patent EP2559767	NA	coding protein	psRNATarget
HI405982.1	ncRNA:24   UGCU-GAGCUGCGGUAUCUAGAAUC   1   *|||-||||=|||||||||||||=| targets:63   CCGAACUCGGCGCCAUAGAUCUUGG   87 Target Full Sequence	2.5	Sequence 4107 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008666663.2	ncRNA:24   UGCU-GAGCUGCGGUAUCUAGAAUC   1   *|||-||||=|||||||||||||=| targets:781   CCGAGCUCGGCGCCAUAGAUCUUGG   805 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   UGCU-GAGCUGCGGUAUCUAGAAUC   1   *|||-||||=|||||||||||||=| targets:129   CCGAGCUCGGCGCCAUAGAUCUUGG   153 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   UGCU-GAGCUGCGGUAUCUAGAAUC   1   *|||-||||=|||||||||||||=| targets:1221   CCGAGCUCGGCGCCAUAGAUCUUGG   1245 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   UGCU-GAGCUGCGGUAUCUAGAAUC   1   *|||-||||=|||||||||||||=| targets:127   CCGAGCUCGGCGCCAUAGAUCUUGG   151 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   UGCU-GAGCUGCGGUAUCUAGAAUC   1   *|||-||||=|||||||||||||=| targets:1219   CCGAGCUCGGCGCCAUAGAUCUUGG   1243 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   UGCU-GAGCUGCGGUAUCUAGAAUC   1   *|||-||||=|||||||||||||=| targets:187   CCGAGCUCGGCGCCAUAGAUCUUGG   211 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   UGCU-GAGCUGCGGUAUCUAGAAUC   1   *|||-||||=|||||||||||||=| targets:1278   CCGAGCUCGGCGCCAUAGAUCUUGG   1302 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   UGCU-GAGCUGCGGUAUCUAGAAUC   1   *|||-||||=|||||||||||||=| targets:187   CCGAGCUCGGCGCCAUAGAUCUUGG   211 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   UGCU-GAGCUGCGGUAUCUAGAAUC   1   *|||-||||=|||||||||||||=| targets:1278   CCGAGCUCGGCGCCAUAGAUCUUGG   1302 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543535.1	ncRNA:24   UGCUGAGCUGCGGUAUCUAGAAUC   1   ||**||||=|||||||||||||=| targets:282   ACAUCUCGGCGCCAUAGAUCUUGG   305 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA	NA	coding protein	psRNATarget
BT038470.1	ncRNA:24   UGCUGAGCUGCGGUAUCUAGAAUC   1   ||**||||=|||||||||||||=| targets:1674   ACAUCUCGGCGCCAUAGAUCUUGG   1697 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146799.1	ncRNA:24   UGCUGAGCUGCGGUAUCUAGAAUC   1   ||**||||=|||||||||||||=| targets:1674   ACAUCUCGGCGCCAUAGAUCUUGG   1697 Target Full Sequence	2.5	Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:24   UGCUGAGCUGCGGUAUCUAGAAUC   1   ||**||||=|||||||||||||=| targets:1756   ACAUCUCGGCGCCAUAGAUCUUGG   1779 Target Full Sequence	2.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:24   UGCUGAGCUGCGGUAUCUAGAAUC   1   ||**||||=|||||||||||||=| targets:1781   ACAUCUCGGCGCCAUAGAUCUUGG   1804 Target Full Sequence	2.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:24   UGCUGAGCUGCGGUAUCUAGAAUC   1   ||**||||=|||||||||||||=| targets:1788   ACAUCUCGGCGCCAUAGAUCUUGG   1811 Target Full Sequence	2.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538144.1	ncRNA:24   UGCUGAGCUGCGGUAUCUAGAAUC   1   =*|=*|||=|||||||||||||=| targets:105   GAGGGUCGGCGCCAUAGAUCUUGG   128 Target Full Sequence	2.5	PREDICTED: Zea mays pEARLI1-like lipid transfer protein 1 (LOC103628601), mRNA	NA	coding protein	psRNATarget
XM_020544775.1	ncRNA:24   UGCUGAGCUGCGGUAUCUAGAAUC   1   =*|=*|||=|||||||||||||=| targets:63   GGGGGUCGGCGCCAUAGAUCUUGG   86 Target Full Sequence	2.5	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA	NA	coding protein	psRNATarget
XM_008668233.1	ncRNA:24   UGCUGAGCUGCGGUAUCUAGAAUC   1   =*|=*|||=|||||||||||||=| targets:183   GGGGGUCGGCGCCAUAGAUCUUGG   206 Target Full Sequence	2.5	PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA	NA	coding protein	psRNATarget
XM_020545863.1	ncRNA:24   UGCUGAGCUGCGGUAUCUAGAAUC   1   =*|=*|||=|||||||||||||=| targets:129   GGGGGUCGGCGCCAUAGAUCUUGG   152 Target Full Sequence	2.5	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA	NA	coding protein	psRNATarget
XM_020547098.1	ncRNA:24   UGCUGAGCUGCGGUAUCUAGAAUC   1   =*|=*|||=|||||||||||||=| targets:129   GGGGGUCGGCGCCAUAGAUCUUGG   152 Target Full Sequence	2.5	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA	NA	coding protein	psRNATarget