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BaseInfo

ncRNA ID	novel_zma_miR7528
Species	Zea mays
Class	miRNA
Genome position	Chr10:10259248-10259333 [-]
Reference genome	RefGen_v4
Source	SRR2647467;SRR1583943
Length	24
Mature sequence(if miRNA)	1 - ACCCAAUCUCACUCAAUCCAUGUG - 24
Stem-loop(if miRNA)	--         GA         AAAAAA UAAGAAAGGGUUUGAC   CAUGGAUUG  UGGGAUUGG      U                U   |||||||||  |||||||||      |   GUACCUAAC  ACUCUAACC      C                U GU         UC         ----CA CCAAAUUUAGGGUUGA
Stem-loop sequence	CAUGGAUUGGAUGGGAUUGGAAAAAAUUAAGAAAGGGUUUGACUUAGUUGGGAUUUAAACCCACCCAAUCUCACUCAAUCCAUGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ242290.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||=||||||||||||||||||||| targets:11   CAUAUGGAUUGAGUGAGAUUGGGU   34 Target Full Sequence	0.0	Sequence 8285 from Patent EP2985353	NA	coding protein	psRNATarget
HI410160.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||=||||||||||||||||||||| targets:11   CAUAUGGAUUGAGUGAGAUUGGGU   34 Target Full Sequence	0.0	Sequence 8285 from Patent EP2074227	NA	coding protein	psRNATarget
JB170621.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||=||||||||||||||||||||| targets:11   CAUAUGGAUUGAGUGAGAUUGGGU   34 Target Full Sequence	0.0	Sequence 8285 from Patent EP2559767	NA	coding protein	psRNATarget
HI410219.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   |||||||||||||||=|||||||| targets:12   CACAUGGAUUGAGUGGGAUUGGGU   35 Target Full Sequence	1.5	Sequence 8344 from Patent EP2074227	NA	coding protein	psRNATarget
JB170680.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   |||||||||||||||=|||||||| targets:12   CACAUGGAUUGAGUGGGAUUGGGU   35 Target Full Sequence	1.5	Sequence 8344 from Patent EP2559767	NA	coding protein	psRNATarget
HI410151.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   |||||||||||||||=|||||||| targets:12   CACAUGGAUUGAGUGGGAUUGGGU   35 Target Full Sequence	1.5	Sequence 8276 from Patent EP2074227	NA	coding protein	psRNATarget
JB170612.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   |||||||||||||||=|||||||| targets:12   CACAUGGAUUGAGUGGGAUUGGGU   35 Target Full Sequence	1.5	Sequence 8276 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242349.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   |||||||||||||||=|||||||| targets:12   CACAUGGAUUGAGUGGGAUUGGGU   35 Target Full Sequence	1.5	Sequence 8344 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242281.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   |||||||||||||||=|||||||| targets:12   CACAUGGAUUGAGUGGGAUUGGGU   35 Target Full Sequence	1.5	Sequence 8276 from Patent EP2985353	NA	coding protein	psRNATarget
BT086611.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   |||||||||||||||=|||||||| targets:1078   CACAUGGAUUGAGUGGGAUUGGGU   1101 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0191G08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196567.2	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   |||||||||||||||=|||||||| targets:1142   CACAUGGAUUGAGUGGGAUUGGGU   1165 Target Full Sequence	1.5	Zea mays resistance to phytophthora 1 (LOC100501929), mRNA	NA	coding protein	psRNATarget
BT040208.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||=||||||||||||||||||||| targets:1302   CAUAUGGAUUGAGUGAGAUUGGGU   1325 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0071O17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539151.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   |||||||||||||||=|||||||| targets:225   CACAUGGAUUGAGUGGGAUUGGGU   248 Target Full Sequence	1.5	PREDICTED: Zea mays resistance to phytophthora 1 (LOC100501929), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB169581.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   |||||||||||||||=|||||||* targets:12   CACAUGGAUUGAGUGGGAUUGGGG   35 Target Full Sequence	2.5	Sequence 7245 from Patent EP2559767	NA	coding protein	psRNATarget
HI409120.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   |||||||||||||||=|||||||* targets:12   CACAUGGAUUGAGUGGGAUUGGGG   35 Target Full Sequence	2.5	Sequence 7245 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241250.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   |||||||||||||||=|||||||* targets:12   CACAUGGAUUGAGUGGGAUUGGGG   35 Target Full Sequence	2.5	Sequence 7245 from Patent EP2985353	NA	coding protein	psRNATarget
JB166282.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==|||||||||||=|||||||| targets:27   CAUGUGGAUUGAGUGGGAUUGGGU   50 Target Full Sequence	1.5	Sequence 3946 from Patent EP2559767	NA	coding protein	psRNATarget
HI405821.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==|||||||||||=|||||||| targets:27   CAUGUGGAUUGAGUGGGAUUGGGU   50 Target Full Sequence	1.5	Sequence 3946 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237951.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==|||||||||||=|||||||| targets:27   CAUGUGGAUUGAGUGGGAUUGGGU   50 Target Full Sequence	1.5	Sequence 3946 from Patent EP2985353	NA	coding protein	psRNATarget
EZ107685.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==|||||||||||=|||||||| targets:26   CAUGUGGAUUGAGUGGGAUUGGGU   49 Target Full Sequence	1.5	TSA: Zea mays contig43343, mRNA sequence	NA	coding protein	psRNATarget
BT018093.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==|||||||||||=|||||||| targets:1088   CAUGUGGAUUGAGUGGGAUUGGGU   1111 Target Full Sequence	1.5	Zea mays clone EL01N0552E08.c mRNA sequence	NA	coding protein	psRNATarget
XM_008651215.2	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==|||||||||||=|||||||| targets:392   CAUGUGGAUUGAGUGGGAUUGGGU   415 Target Full Sequence	1.5	PREDICTED: Zea mays putative domain of unknown function (DUF641) containing family protein (LOC103630129), mRNA	NA	coding protein	psRNATarget
LQ238026.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||=|||||||||||||||||||*| targets:16   CAUAUGGAUUGAGUGAGAUUGGAU   39 Target Full Sequence	1.5	Sequence 4021 from Patent EP2985353	NA	coding protein	psRNATarget
JB166357.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||=|||||||||||||||||||*| targets:16   CAUAUGGAUUGAGUGAGAUUGGAU   39 Target Full Sequence	1.5	Sequence 4021 from Patent EP2559767	NA	coding protein	psRNATarget
HI405896.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||=|||||||||||||||||||*| targets:16   CAUAUGGAUUGAGUGAGAUUGGAU   39 Target Full Sequence	1.5	Sequence 4021 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008657651.2	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||=||||||||||||||||||*|| targets:964   CAUAUGGAUUGAGUGAGAUUGUGU   987 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657650.2	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||=||||||||||||||||||*|| targets:1043   CAUAUGGAUUGAGUGAGAUUGUGU   1066 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657652.2	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||=||||||||||||||||||*|| targets:1085   CAUAUGGAUUGAGUGAGAUUGUGU   1108 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020542405.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||=||||||||||||||||||*|| targets:1153   CAUAUGGAUUGAGUGAGAUUGUGU   1176 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542404.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||=||||||||||||||||||*|| targets:1163   CAUAUGGAUUGAGUGAGAUUGUGU   1186 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT088422.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||=|||||||||||||||||||*| targets:301   CAUAUGGAUUGAGUGAGAUUGGAU   324 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0189N22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196996.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||=|||||||||||||||||||*| targets:301   CAUAUGGAUUGAGUGAGAUUGGAU   324 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502518 (LOC100502518), mRNA	NA	coding protein	psRNATarget
LQ242020.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:8   CAUGUGGAUUGAGUGAGAUUGGAU   31 Target Full Sequence	1.5	Sequence 8015 from Patent EP2985353	NA	coding protein	psRNATarget
HI409890.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:8   CAUGUGGAUUGAGUGAGAUUGGAU   31 Target Full Sequence	1.5	Sequence 8015 from Patent EP2074227	NA	coding protein	psRNATarget
JB170351.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:8   CAUGUGGAUUGAGUGAGAUUGGAU   31 Target Full Sequence	1.5	Sequence 8015 from Patent EP2559767	NA	coding protein	psRNATarget
JB166348.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:29   CAUGUGGAUUGAGUGAGAUUGGAU   52 Target Full Sequence	1.5	Sequence 4012 from Patent EP2559767	NA	coding protein	psRNATarget
HI405887.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:29   CAUGUGGAUUGAGUGAGAUUGGAU   52 Target Full Sequence	1.5	Sequence 4012 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238017.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:29   CAUGUGGAUUGAGUGAGAUUGGAU   52 Target Full Sequence	1.5	Sequence 4012 from Patent EP2985353	NA	coding protein	psRNATarget
JB166341.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:27   CAUGUGGAUUGAGUGAGAUUGGAU   50 Target Full Sequence	1.5	Sequence 4005 from Patent EP2559767	NA	coding protein	psRNATarget
HI405880.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:27   CAUGUGGAUUGAGUGAGAUUGGAU   50 Target Full Sequence	1.5	Sequence 4005 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237970.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:27   CAUGUGGAUUGAGUGAGAUUGGAU   50 Target Full Sequence	1.5	Sequence 3965 from Patent EP2985353	NA	coding protein	psRNATarget
HI405840.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:27   CAUGUGGAUUGAGUGAGAUUGGAU   50 Target Full Sequence	1.5	Sequence 3965 from Patent EP2074227	NA	coding protein	psRNATarget
JB166301.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:27   CAUGUGGAUUGAGUGAGAUUGGAU   50 Target Full Sequence	1.5	Sequence 3965 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238010.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:27   CAUGUGGAUUGAGUGAGAUUGGAU   50 Target Full Sequence	1.5	Sequence 4005 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238016.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:30   CAUGUGGAUUGAGUGAGAUUGGAU   53 Target Full Sequence	1.5	Sequence 4011 from Patent EP2985353	NA	coding protein	psRNATarget
HI405886.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:30   CAUGUGGAUUGAGUGAGAUUGGAU   53 Target Full Sequence	1.5	Sequence 4011 from Patent EP2074227	NA	coding protein	psRNATarget
JB166347.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:30   CAUGUGGAUUGAGUGAGAUUGGAU   53 Target Full Sequence	1.5	Sequence 4011 from Patent EP2559767	NA	coding protein	psRNATarget
EU942632.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:193   CAUGUGGAUUGAGUGAGAUUGGAU   216 Target Full Sequence	1.5	Zea mays clone 1525411 mRNA sequence	NA	coding protein	psRNATarget
NM_001149687.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:671   CAUGUGGAUUGAGUGAGAUUGGAU   694 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275644 (LOC100275644), mRNA	NA	coding protein	psRNATarget
EU957313.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:671   CAUGUGGAUUGAGUGAGAUUGGAU   694 Target Full Sequence	1.5	Zea mays clone 1588341 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT084790.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==|||||||||||*|||||||| targets:1044   CAUGUGGAUUGAGUGUGAUUGGGU   1067 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0181D14 mRNA, complete cds	NA	coding protein	psRNATarget
EU962683.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||||||||||||||*| targets:1548   CAUGUGGAUUGAGUGAGAUUGGAU   1571 Target Full Sequence	1.5	Zea mays clone 244714 mRNA sequence	NA	coding protein	psRNATarget
BT066344.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==|||||||||||*|||||||| targets:2883   CAUGUGGAUUGAGUGUGAUUGGGU   2906 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0346C18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175804.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==|||||||||||*|||||||| targets:2883   CAUGUGGAUUGAGUGUGAUUGGGU   2906 Target Full Sequence	1.5	Zea mays putative ARF GTPase activating domain protein with ankyrin repeat-containing protein (LOC100383138), mRNA	NA	coding protein	psRNATarget
HI403242.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||*||||||||||*|| targets:21   CAUGUGGAUUAAGUGAGAUUGAGU   44 Target Full Sequence	2.5	Sequence 1367 from Patent EP2074227	NA	coding protein	psRNATarget
JB163703.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||*||||||||||*|| targets:21   CAUGUGGAUUAAGUGAGAUUGAGU   44 Target Full Sequence	2.5	Sequence 1367 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235372.1	ncRNA:24   GUGUACCUAACUCACUCUAACCCA   1   ||==||||||*||||||||||*|| targets:21   CAUGUGGAUUAAGUGAGAUUGAGU   44 Target Full Sequence	2.5	Sequence 1367 from Patent EP2985353	NA	coding protein	psRNATarget