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BaseInfo

ncRNA ID	novel_zma_miR7527
Species	Zea mays
Class	miRNA
Genome position	Chr1:99324379-99324488 [+]
Reference genome	RefGen_v4
Source	SRR2647467
Length	23
Mature sequence(if miRNA)	1 - UGAUUUGGUGACCAGGUAUCACG - 23
Stem-loop(if miRNA)	--            C     --      -A           G      A A     UA   UGAUUUGGUGAC AGGUA  UCACGG  GGAUUGGAGGG AUUGAG G GAAAU  G   |||||||||||| |||||  ||||||  ||||||||||| |||||| | |||||   ACUAAGCCACUG UUCAU  AGUGUC  CCUAACCUCCC UAACUC C CUUUA  U CA            -     CU      CC           -      - C     CU
Stem-loop sequence	UGAUUUGGUGACCAGGUAUCACGGAGGAUUGGAGGGGAUUGAGAGAGAAAUUAGUUCAUUUCCCCUCAAUCCCUCCAAUCCCCCUGUGAUCUACUUGUCACCGAAUCAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403355.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:56   CGUGAUCCCUGGUCACCAAAUCA   78 Target Full Sequence	1.0	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
JB163816.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:56   CGUGAUCCCUGGUCACCAAAUCA   78 Target Full Sequence	1.0	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:56   CGUGAUCCCUGGUCACCAAAUCA   78 Target Full Sequence	1.0	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235575.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:57   CGUGAUCCCUGGUCACCAAAUCA   79 Target Full Sequence	1.0	Sequence 1570 from Patent EP2985353	NA	coding protein	psRNATarget
JB163906.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:57   CGUGAUCCCUGGUCACCAAAUCA   79 Target Full Sequence	1.0	Sequence 1570 from Patent EP2559767	NA	coding protein	psRNATarget
HI403445.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:57   CGUGAUCCCUGGUCACCAAAUCA   79 Target Full Sequence	1.0	Sequence 1570 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:58   CGUGAUCCCUGGUCACCAAAUCA   80 Target Full Sequence	1.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:58   CGUGAUCCCUGGUCACCAAAUCA   80 Target Full Sequence	1.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:58   CGUGAUCCCUGGUCACCAAAUCA   80 Target Full Sequence	1.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235365.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:91   CGUGAUCCCUGGUCACCAAAUCA   113 Target Full Sequence	1.0	Sequence 1360 from Patent EP2985353	NA	coding protein	psRNATarget
HI403402.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:91   CGUGAUCCCUGGUCACCAAAUCA   113 Target Full Sequence	1.0	Sequence 1527 from Patent EP2074227	NA	coding protein	psRNATarget
JB163863.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:91   CGUGAUCCCUGGUCACCAAAUCA   113 Target Full Sequence	1.0	Sequence 1527 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235532.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:91   CGUGAUCCCUGGUCACCAAAUCA   113 Target Full Sequence	1.0	Sequence 1527 from Patent EP2985353	NA	coding protein	psRNATarget
HI403235.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:91   CGUGAUCCCUGGUCACCAAAUCA   113 Target Full Sequence	1.0	Sequence 1360 from Patent EP2074227	NA	coding protein	psRNATarget
JB163696.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:91   CGUGAUCCCUGGUCACCAAAUCA   113 Target Full Sequence	1.0	Sequence 1360 from Patent EP2559767	NA	coding protein	psRNATarget
HI403301.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:92   CGUGAUCCCUGGUCACCAAAUCA   114 Target Full Sequence	1.0	Sequence 1426 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235431.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:92   CGUGAUCCCUGGUCACCAAAUCA   114 Target Full Sequence	1.0	Sequence 1426 from Patent EP2985353	NA	coding protein	psRNATarget
JB163762.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:92   CGUGAUCCCUGGUCACCAAAUCA   114 Target Full Sequence	1.0	Sequence 1426 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235405.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:95   CGUGAUCCCUGGUCACCAAAUCA   117 Target Full Sequence	1.0	Sequence 1400 from Patent EP2985353	NA	coding protein	psRNATarget
HI403275.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:95   CGUGAUCCCUGGUCACCAAAUCA   117 Target Full Sequence	1.0	Sequence 1400 from Patent EP2074227	NA	coding protein	psRNATarget
JB163751.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:95   CGUGAUCCCUGGUCACCAAAUCA   117 Target Full Sequence	1.0	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:95   CGUGAUCCCUGGUCACCAAAUCA   117 Target Full Sequence	1.0	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
HI403290.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:95   CGUGAUCCCUGGUCACCAAAUCA   117 Target Full Sequence	1.0	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
JB163736.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:95   CGUGAUCCCUGGUCACCAAAUCA   117 Target Full Sequence	1.0	Sequence 1400 from Patent EP2559767	NA	coding protein	psRNATarget
JB163810.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:127   CGUGAUCCCUGGUCACCAAAUCA   149 Target Full Sequence	1.0	Sequence 1474 from Patent EP2559767	NA	coding protein	psRNATarget
HI403349.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:127   CGUGAUCCCUGGUCACCAAAUCA   149 Target Full Sequence	1.0	Sequence 1474 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235479.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*|||||||||||||||| targets:127   CGUGAUCCCUGGUCACCAAAUCA   149 Target Full Sequence	1.0	Sequence 1474 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001352049.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*||||||||=||||||| targets:575   CGUGAUCCCUGGUCAUCAAAUCA   597 Target Full Sequence	2.5	Zea mays uncharacterized LOC100284194 (pco105859), transcript variant 2, mRNA	NA	coding protein	psRNATarget
XM_020547779.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*||||||||=||||||| targets:603   CGUGAUCCCUGGUCAUCAAAUCA   625 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547780.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*||||||||=||||||| targets:605   CGUGAUCCCUGGUCAUCAAAUCA   627 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001317055.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*||*||||||||||||| targets:1524   CGUGAUUCCGGGUCACCAAAUCA   1546 Target Full Sequence	2.0	Zea mays Membrane metalloprotease ARASP chloroplastic (LOC100274122), mRNA	NA	coding protein	psRNATarget
BT042257.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||*||*||||||||||||| targets:1524   CGUGAUUCCGGGUCACCAAAUCA   1546 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0181O20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667438.2	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||||||**||||||||||||||| targets:3563   CGUGAUCGCUGGUCACCAAAUCA   3585 Target Full Sequence	2.0	PREDICTED: Zea mays BRCA1 C Terminus domain containing protein expressed (LOC103644241), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008667073.2	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   =|||||*|||||||||||||*|| targets:3387   UGUGAUUCCUGGUCACCAAACCA   3409 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008667075.2	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   =|||||*|||||||||||||*|| targets:3403   UGUGAUUCCUGGUCACCAAACCA   3425 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667074.2	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   =|||||*|||||||||||||*|| targets:3407   UGUGAUUCCUGGUCACCAAACCA   3429 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ235458.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ***|||*|||||||||||||||| targets:69   AUAGAUCCCUGGUCACCAAAUCA   91 Target Full Sequence	1.0	Sequence 1453 from Patent EP2985353	NA	coding protein	psRNATarget
JB163789.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ***|||*|||||||||||||||| targets:69   AUAGAUCCCUGGUCACCAAAUCA   91 Target Full Sequence	1.0	Sequence 1453 from Patent EP2559767	NA	coding protein	psRNATarget
HI403328.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ***|||*|||||||||||||||| targets:69   AUAGAUCCCUGGUCACCAAAUCA   91 Target Full Sequence	1.0	Sequence 1453 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008675221.2	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   |**|||*|||||||||||||||| targets:176   CCCGAUCCCUGGUCACCAAAUCA   198 Target Full Sequence	1.0	PREDICTED: Zea mays gibberellin responsive 1 (gar1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ056613.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||*|||*||*||||||||||||| targets:155   CGGGAUCCCCGGUCACCAAAUCA   177 Target Full Sequence	2.0	TSA: Zea mays contig57735, mRNA sequence	NA	coding protein	psRNATarget
EU950017.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||*|||*||*||||||||||||| targets:508   CGGGAUCCCGGGUCACCAAAUCA   530 Target Full Sequence	2.0	Zea mays clone 457681 mRNA sequence	NA	coding protein	psRNATarget
NM_001196706.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||*|||*||*||||||||||||| targets:862   CGGGAUCCCCGGUCACCAAAUCA   884 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100502229), mRNA	NA	coding protein	psRNATarget
BT087480.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||*|||*||*||||||||||||| targets:862   CGGGAUCCCCGGUCACCAAAUCA   884 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0089I03 mRNA, complete cds	NA	coding protein	psRNATarget
EU967725.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||*|||*||*||||||||||||| targets:1128   CGGGAUCCCCGGUCACCAAAUCA   1150 Target Full Sequence	2.0	Zea mays clone 305590 mRNA sequence	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   |*||||*||*||||||||||||| targets:2176   CAUGAUCCCGGGUCACCAAAUCA   2198 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671854.2	ncRNA:23   GCACUAUGGACCAGUGGUUUAGU   1   ||*|||*||*||||||||||||| targets:66   CGGGAUCCCCGGUCACCAAAUCA   88 Target Full Sequence	2.0	PREDICTED: Zea mays alpha-glucosidase 2 (LOC103647311), transcript variant X2, mRNA	NA	coding protein	psRNATarget