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BaseInfo

ncRNA ID novel_zma_miR7520
Species Zea mays
Class miRNA
Genome position Chr1:108059249-108059301 [-]
Reference genome RefGen_v4
Source SRR2647467;SRR1583943
Length 24
Mature sequence(if miRNA) 1 - GACUAGGCGGGGAUUUAAACCCCU - 24
Stem-loop(if miRNA) --                       U
  GGGUUUAAAUCCCCGCCUAGUCA U
  ||||||||||||||||||||||| U
  CCCAAAUUUAGGGGCGGAUCAGU U
UC                       U
Stem-loop sequence GGGUUUAAAUCCCCGCCUAGUCAUUUUUUGACUAGGCGGGGAUUUAAACCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ095217.1
ncRNA:24   UCCCCAAAUUUAGGGGCGGAUCAG   1
  ||||||||||||||||||||||||
targets:73   AGGGGUUUAAAUCCCCGCCUAGUC   96

0.0 TSA: Zea mays contig30870, mRNA sequence NA coding protein psRNATarget
XM_020542872.1
ncRNA:24   UCCCCAAAUUUAGGGGCGGAUCAG   1
  |||||||||||||||||=||||||
targets:1304   AGGGGUUUAAAUCCCCGUCUAGUC   1327

1.5 PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (LOC103634808), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020540164.1
ncRNA:24   UCCCCAAAUUUAGGGGCGGAUCAG   1
  |||||||||||||||||=||||||
targets:1556   AGGGGUUUAAAUCCCCGUCUAGUC   1579

1.5 PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235158.1
ncRNA:24   UCCCCAAAUUUAGGGGCGGAUCAG   1
  ||*||*||*|||||||||||||||
targets:36   AGAGGAUUUAAUCCCCGCCUAGUC   59

2.0 Sequence 1153 from Patent EP2985353 NA coding protein psRNATarget
HI403028.1
ncRNA:24   UCCCCAAAUUUAGGGGCGGAUCAG   1
  ||*||*||*|||||||||||||||
targets:36   AGAGGAUUUAAUCCCCGCCUAGUC   59

2.0 Sequence 1153 from Patent EP2074227 NA coding protein psRNATarget
JB163489.1
ncRNA:24   UCCCCAAAUUUAGGGGCGGAUCAG   1
  ||*||*||*|||||||||||||||
targets:36   AGAGGAUUUAAUCCCCGCCUAGUC   59

2.0 Sequence 1153 from Patent EP2559767 NA coding protein psRNATarget
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