Search result

BaseInfo

ncRNA ID	novel_zma_miR7518
Species	Zea mays
Class	miRNA
Genome position	Chr10:142048726-142048809 [-]
Reference genome	RefGen_v4
Source	SRR1745812
Length	21
Mature sequence(if miRNA)	64 - AUGGAGUGGAUUGAGGGGACU - 84
Stem-loop(if miRNA)	--      U           A   G   C CC     C   A   AUGGAG GGAUUGAGGGG CUA AAU C  UGCUA UUA U   |||||| ||||||||||| ||| ||| |  ||||| |||   UACCUC CCUAACUCCCC GAU UUA G  GUGAU AGU U AU      C           C   A   A UA     A   U
Stem-loop sequence	AUGGAGUGGAUUGAGGGGACUAGAAUCCCCUGCUACUUAAUUUUGAAUAGUGAUGAAUUAUAGCCCCCUCAAUCCCCUCCAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU975960.1	ncRNA:21   UCAGGGGAGUUAGGUGAGGUA   1   =*|||=|||=||||||||||| targets:251   GCUCCUCUCGAUCCACUCCAU   271 Target Full Sequence	2.5	Zea mays clone 506587 mRNA sequence	NA	coding protein	psRNATarget
NM_001322425.1	ncRNA:21   UCAGGGGAGUUAGGUGAGGUA   1   =*|||=|||=||||||||||| targets:251   GCUCCUCUCGAUCCACUCCAU   271 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC107546749), mRNA	NA	coding protein	psRNATarget
EZ077410.1	ncRNA:21   UCAGGGGAGUUAGGUGAGGUA   1   ***||||||||||||||=||| targets:61   UUCCCCCUCAAUCCACUUCAU   81 Target Full Sequence	2.5	TSA: Zea mays contig13047, mRNA sequence	NA	coding protein	psRNATarget
EU954524.1	ncRNA:21   UCAGGGGAGUUAGGUGAGGUA   1   ***||||||||||||||=||| targets:61   UUCCCCCUCAAUCCACUUCAU   81 Target Full Sequence	2.5	Zea mays clone 1469353 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149312.1	ncRNA:21   UCAGGGGAGUUAGGUGAGGUA   1   ***||||||||||||||=||| targets:61   UUCCCCCUCAAUCCACUUCAU   81 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275152 (LOC100275152), mRNA	NA	coding protein	psRNATarget
XM_008681548.2	ncRNA:21   UCAGGGGAGUUAGGUGAGGUA   1   ***||||||||||||||=||| targets:69   UUCCCCCUCAAUCCACUUCAU   89 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103654710), mRNA	NA	coding protein	psRNATarget
EZ055935.1	ncRNA:21   UCAGGGGAGUUAGGUGAGGUA   1   ****||||||||||||||||| targets:17   UACACCCUCAAUCCACUCCAU   37 Target Full Sequence	2.0	TSA: Zea mays contig57057, mRNA sequence	NA	coding protein	psRNATarget