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BaseInfo

ncRNA ID	novel_zma_miR7516
Species	Zea mays
Class	miRNA
Genome position	Chr1:182656623-182656805 [-]
Reference genome	RefGen_v4
Source	SRR2647467
Length	24
Mature sequence(if miRNA)	160 - AAUUUAGCCUCUAUCACAUCGAAU - 183
Stem-loop(if miRNA)	--AA      C  -UA         A       ACC  CGUUC       U        UC      UAAAACUAAUUUCUCAGCCGAAGAUU     UUUAGC UC   UCACAUCGA UGUUUGA   UC     GGGGUAU AAAUGUAG  GGAUUA                          A     |||||| ||   ||||||||| |||||||   ||     ||||||| ||||||||  ||||||     AAAUCG AG   AGUGUAGUU GCAAACU   AG     CCUCAUA UUUAUAUC  GGGUUG                          A UUUC      -  CCC         C       GAA  UUUAU       C        -U      GUUGACAUGAUCUAAGCAGAGUGAAA
Stem-loop sequence	AAUUUAGCCUCUAUCACAUCGAAUGUUUGAACCUCCGUUCGGGGUAUUAAAUGUAGUCGGAUUAUAAAACUAAUUUCUCAGCCGAAGAUUAAAAAGUGAGACGAAUCUAGUACAGUUGGUUGGGUCUAUAUUUCAUACUCCUAUUUGAAAGUCAAACGCUUGAUGUGACCCGAGCUAAACUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT084930.2	ncRNA:24   UAAGCUACACUAUCUCCGAUUUAA   1   ||||||||||||||=||||||||| targets:303   AUUCGAUGUGAUAGGGGCUAAAUU   326 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0209B02 mRNA, complete cds	NA	coding protein	psRNATarget
EU957829.1	ncRNA:24   UAAGCUACACUAUCUCCGAUUUAA   1   ||||||||||||||=||||||||| targets:1969   AUUCGAUGUGAUAGGGGCUAAAUU   1992 Target Full Sequence	1.5	Zea mays clone 1624895 amino acid permease mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154684.1	ncRNA:24   UAAGCUACACUAUCUCCGAUUUAA   1   ||||||||||||||=||||||||| targets:1969   AUUCGAUGUGAUAGGGGCUAAAUU   1992 Target Full Sequence	1.5	Zea mays amino acid permease (LOC100281764), mRNA	NA	coding protein	psRNATarget
XM_008671848.2	ncRNA:24   UAAGCUACACUAUCUCCGAUUUAA   1   ||||||||*||*|||||||||||| targets:820   AUUCGAUGGGACAGAGGCUAAAUU   843 Target Full Sequence	2.5	PREDICTED: Zea mays subtilisin-like protease SBT3.3 (LOC103647304), mRNA	NA	coding protein	psRNATarget