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BaseInfo

ncRNA ID novel_zma_miR7513
Species Zea mays
Class miRNA
Genome position Chr1:302187821-302187967 [-]
Reference genome RefGen_v4
Source SRR2647467
Length 24
Mature sequence(if miRNA) 124 - AAUCUGGGUCACAUGAUGUUGAUC - 147
Stem-loop(if miRNA) --                  U    CCG    A C  -       -   A  GGAG  A       ----AA  G  AUU
  AAUCUGGGUCACAUGAUG UGAU   AGAG G GA GCGCGGG GUG GA    AG UUUGCAA      GU UG   A
  |||||||||||||||||| ||||   |||| | || ||||||| ||| ||    || |||||||      || ||
  UUAGACUCGGUGUACUAC ACUA   UUUC C CU CGCGCUC CAC CU    UU AAGCGUU      CA GC   G
AA                  U    -AA    - -  G       U   -  ---A  A       AAUUGG  G  GAG
Stem-loop sequence AAUCUGGGUCACAUGAUGUUGAUCCGAGAGAGCGAGCGCGGGGUGAGAGGAGAGAUUUGCAAAAGUGUGAUUAGGAGCGGACGGUUAAUUGCGAAAUUAUCCACUCUCGCGCGUCCCUUUAAAUCAUCAUCAUGUGGCUCAGAUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403127.1
ncRNA:24   CUAGUUGUAGUACACUGGGUCUAA   1
  |||||||||||||||=||||||||
targets:131   GAUCAACAUCAUGUGGCCCAGAUU   154

1.5 Sequence 1252 from Patent EP2074227 NA coding protein psRNATarget
LQ235257.1
ncRNA:24   CUAGUUGUAGUACACUGGGUCUAA   1
  |||||||||||||||=||||||||
targets:131   GAUCAACAUCAUGUGGCCCAGAUU   154

1.5 Sequence 1252 from Patent EP2985353 NA coding protein psRNATarget
JB163588.1
ncRNA:24   CUAGUUGUAGUACACUGGGUCUAA   1
  |||||||||||||||=||||||||
targets:131   GAUCAACAUCAUGUGGCCCAGAUU   154

1.5 Sequence 1252 from Patent EP2559767 NA coding protein psRNATarget