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BaseInfo

ncRNA ID	novel_zma_miR7490
Species	Zea mays
Class	miRNA
Genome position	Chr7:135400696-135400786 [+]
Reference genome	RefGen_v4
Source	SRR2647467
Length	23
Mature sequence(if miRNA)	1 - AAUCUGUCUAGAUUAUAUAAUCU - 23
Stem-loop(if miRNA)	--                                        CAC   AAUCUGUCUAGAUUAUAUAAUCUAACAAAUUGUGAACUAA   U   ||||||||||||||||||||||||||||||||||||||||   A   UUAGACAGAUCUAAUAUAUUAGGUUGUUUAAUACUUGAUU   A UA                                        CAC
Stem-loop sequence	AAUCUGUCUAGAUUAUAUAAUCUAACAAAUUGUGAACUAACACUAACACUUAGUUCAUAAUUUGUUGGAUUAUAUAAUCUAGACAGAUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008669523.2	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   ||||||||||||||||||||||| targets:2108   AGAUUAUAUAAUCUAGACAGAUU   2130 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (LOC100278420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001152270.1	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   |||||||||=||||||||||||| targets:1640   AGAUUAUAUGAUCUAGACAGAUU   1662 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279249 (LOC100279249), mRNA	NA	coding protein	psRNATarget
BT053896.1	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   |||||||||=||||||||||||| targets:1640   AGAUUAUAUGAUCUAGACAGAUU   1662 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0019L09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682894.2	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   =|||||||||||||=|||||||| targets:5045   GGAUUAUAUAAUCUGGACAGAUU   5067 Target Full Sequence	1.5	PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (si618080f12(37)), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008681303.2	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   |||||=||||||||=|||||||| targets:2327   AGAUUGUAUAAUCUGGACAGAUU   2349 Target Full Sequence	2.5	PREDICTED: Zea mays F-box protein At-B (LOC103654475), mRNA	NA	coding protein	psRNATarget
EU944939.1	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   =|||||||||||||||=|||||| targets:788   GGAUUAUAUAAUCUAGGCAGAUU   810 Target Full Sequence	1.5	Zea mays clone 235800 mRNA sequence	NA	coding protein	psRNATarget
EU977031.1	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   |||||=||||||||=|||||||| targets:670   AGAUUGUAUAAUCUGGACAGAUU   692 Target Full Sequence	2.5	Zea mays clone 996758 mRNA sequence	NA	coding protein	psRNATarget
XM_020547943.1	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   =*||||||||||||||||||||| targets:3414   GAAUUAUAUAAUCUAGACAGAUU   3436 Target Full Sequence	0.0	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547944.1	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   =*||||||||||||||||||||| targets:3399   GAAUUAUAUAAUCUAGACAGAUU   3421 Target Full Sequence	0.0	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547945.1	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   =*||||||||||||||||||||| targets:3270   GAAUUAUAUAAUCUAGACAGAUU   3292 Target Full Sequence	0.0	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT084075.1	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   =*||||||||||||||||||||| targets:1285   GAAUUAUAUAAUCUAGACAGAUU   1307 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0071H15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177200.1	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   =*||||||||||||||||||||| targets:1285   GAAUUAUAUAAUCUAGACAGAUU   1307 Target Full Sequence	0.0	Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), mRNA	NA	coding protein	psRNATarget
LQ235122.1	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   ||||||||||||||*|||||||| targets:64   AGAUUAUAUAAUCUUGACAGAUU   86 Target Full Sequence	1.5	Sequence 1117 from Patent EP2985353	NA	coding protein	psRNATarget
JB163453.1	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   ||||||||||||||*|||||||| targets:64   AGAUUAUAUAAUCUUGACAGAUU   86 Target Full Sequence	1.5	Sequence 1117 from Patent EP2559767	NA	coding protein	psRNATarget
HI402992.1	ncRNA:23   UCUAAUAUAUUAGAUCUGUCUAA   1   ||||||||||||||*|||||||| targets:64   AGAUUAUAUAAUCUUGACAGAUU   86 Target Full Sequence	1.5	Sequence 1117 from Patent EP2074227	NA	coding protein	psRNATarget