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BaseInfo

ncRNA ID	novel_zma_miR7476
Species	Zea mays
Class	miRNA
Genome position	Chr1:236512936-236513032 [+]
Reference genome	RefGen_v4
Source	SRR2647467
Length	24
Mature sequence(if miRNA)	74 - UUUAAACUCUACUCUAUAAAUAGU - 97
Stem-loop(if miRNA)	--     UAU  C              UAA   A    AU    -  -   A   UGUUU   GA GUAGAGUUUAAAAU   AAA AAUA  GAUA AG GUC G   |||||   || ||||||||||||||   ||| ||||  |||| || |||   AUAAA   CU CAUCUCAAAUUUUA   UUU UUAU  CUAU UC CAG C UG     UAU  -              ---   C    -C    A  U   A
Stem-loop sequence	UGUUUUAUGACGUAGAGUUUAAAAUUAAAAAAAAUAAUGAUAAGGUCAGCAGACUCUAUAUCCUAUUCUUUAUUUUAAACUCUACUCUAUAAAUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001157566.1	ncRNA:24   UGAUAAAUAUCUCAUCUCAAAUUU   1   ||||||||*||||||||||||=|| targets:1214   ACUAUUUACAGAGUAGAGUUUGAA   1237 Target Full Sequence	2.5	Zea mays Protein-S-isoprenylcysteine O-methyltransferase (pco145633), mRNA	NA	coding protein	psRNATarget
EU969267.1	ncRNA:24   UGAUAAAUAUCUCAUCUCAAAUUU   1   ||||||||*||||||||||||=|| targets:1214   ACUAUUUACAGAGUAGAGUUUGAA   1237 Target Full Sequence	2.5	Zea mays clone 327747 protein-S-isoprenylcysteine O-methyltransferase mRNA, complete cds	NA	coding protein	psRNATarget
EU948729.1	ncRNA:24   UGAUAAAUAUCUCAUCUCAAAUUU   1   |=|=|||=|||||||||||||=|| targets:373   AUUGUUUGUAGAGUAGAGUUUGAA   396 Target Full Sequence	2.5	Zea mays clone 383146 mRNA sequence	NA	coding protein	psRNATarget
EZ079344.1	ncRNA:24   UGAUAAAUAUCUCAUCUCAAAUUU   1   ||||||||*||||||||||||=|| targets:64   ACUAUUUACAGAGUAGAGUUUGAA   87 Target Full Sequence	2.5	TSA: Zea mays contig14983, mRNA sequence	NA	coding protein	psRNATarget
NM_001158693.1	ncRNA:24   UGAUAAAUAUCUCAUCUCAAAUUU   1   |||=||||*||||||||||||=|| targets:1229   ACUGUUUACAGAGUAGAGUUUGAA   1252 Target Full Sequence	2.5	Zea mays protein-S-isoprenylcysteine O-methyltransferase (LOC100285803), mRNA	NA	coding protein	psRNATarget
EU974042.1	ncRNA:24   UGAUAAAUAUCUCAUCUCAAAUUU   1   |||=||||*||||||||||||=|| targets:1229   ACUGUUUACAGAGUAGAGUUUGAA   1252 Target Full Sequence	2.5	Zea mays clone 438256 protein-S-isoprenylcysteine O-methyltransferase mRNA, complete cds	NA	coding protein	psRNATarget
BT038684.1	ncRNA:24   UGAUAAAUAUCUCAUCUCAAAUUU   1   |||=||||||*=|||||||||||| targets:1112   ACUGUUUAUAUGGUAGAGUUUAAA   1135 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0309E11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008668269.2	ncRNA:24   UGAUAAAUAUCUCAUCUCAAAUUU   1   |||=||||||*=|||||||||||| targets:1086   ACUGUUUAUAUGGUAGAGUUUAAA   1109 Target Full Sequence	2.5	PREDICTED: Zea mays ras-related protein ARA-3 (LOC100272423), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001146899.1	ncRNA:24   UGAUAAAUAUCUCAUCUCAAAUUU   1   |||=||||||*=|||||||||||| targets:1112   ACUGUUUAUAUGGUAGAGUUUAAA   1135 Target Full Sequence	2.5	Zea mays ras-related protein ARA-3 (LOC100272423), mRNA	NA	coding protein	psRNATarget
BT016418.1	ncRNA:24   UGAUAAAUAUCUCAUCUCAAAUUU   1   |||=||||||*=|||||||||||| targets:1060   ACUGUUUAUAUGGUAGAGUUUAAA   1083 Target Full Sequence	2.5	Zea mays clone Contig251 mRNA sequence	NA	coding protein	psRNATarget
EU943043.1	ncRNA:24   UGAUAAAUAUCUCAUCUCAAAUUU   1   |||=||||*||||||||||||=|| targets:573   ACUGUUUACAGAGUAGAGUUUGAA   596 Target Full Sequence	2.5	Zea mays clone 1555788 mRNA sequence	NA	coding protein	psRNATarget
XM_008674752.2	ncRNA:24   UGAUAAAUAUCUCAUCUCAAAUUU   1   |=|=||||*||||||||||||=|| targets:1226   AUUGUUUACAGAGUAGAGUUUGAA   1249 Target Full Sequence	2.5	PREDICTED: Zea mays Protein-S-isoprenylcysteine O-methyltransferase (pco145633), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ067043.1	ncRNA:24   UG--AUAAAUAUCUCAUCUCAAAUUU   1   ||--||||||*||||||||||||=|| targets:27   ACCGUAUUUACAGAGUAGAGUUUGAA   52 Target Full Sequence	2.5	TSA: Zea mays contig02677, mRNA sequence	NA	coding protein	psRNATarget
BT037419.1	ncRNA:24   UGAUAAAUAUCUCAUCUCAAAUUU   1   *=|=||||||*|||=||||||||| targets:1553   UUUGUUUAUAUAGUGGAGUUUAAA   1576 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0168I20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143225.1	ncRNA:24   UGAUAAAUAUCUCAUCUCAAAUUU   1   *=|=||||||*|||=||||||||| targets:1553   UUUGUUUAUAUAGUGGAGUUUAAA   1576 Target Full Sequence	2.5	Zea mays Microsomal glutathione s-transferase (IDP340), mRNA	NA	coding protein	psRNATarget
EU949302.1	ncRNA:24   UGAU---AAAUAUCUCAUCUCAAAUUU   1   |=|=---||||||*||||||*|||||| targets:792   AUUGCACUUUAUAUAGUAGAAUUUAAA   818 Target Full Sequence	2.5	Zea mays clone 400910 mRNA sequence	NA	coding protein	psRNATarget