Search result

BaseInfo

ncRNA ID	novel_zma_miR7475
Species	Zea mays
Class	miRNA
Genome position	Chr7:162217671-162217800 [-]
Reference genome	RefGen_v4
Source	SRR2647467;SRR1583943
Length	24
Mature sequence(if miRNA)	107 - AUUUUAGAUCUAACGUCUCUGGUU - 130
Stem-loop(if miRNA)	--   U         C         ---    ---UA    --------A   UACAAAUAAUACCUUCCUC   AUU UAGAUCUAA GUCUCUGGU   UGAU     UUGC         AUU                   C   ||| ||||||||| |||||||||   ||||     ||||         |||   UAG AUCUAGAUU CAGAGAUCA   ACUA     AACG         GAA                   A AG   U         A         AAA    UAUAA    AUUCUUGUA   GGCUGUACCACCCCACAUC
Stem-loop sequence	AUUUUAGAUCUAACGUCUCUGGUUGAUUAUUGCAAUUUACAAAUAAUACCUUCCUCCACUACACCCCACCAUGUCGGAAGAUGUUCUUAGCAAAAUAUAUCAAAAACUAGAGACAUUAGAUCUAUGAUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403383.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|||||||||||||||||||| targets:124   AACUAGAGACGUUAGAUCUAAAAU   147 Target Full Sequence	0.0	Sequence 1508 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235513.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|||||||||||||||||||| targets:124   AACUAGAGACGUUAGAUCUAAAAU   147 Target Full Sequence	0.0	Sequence 1508 from Patent EP2985353	NA	coding protein	psRNATarget
JB163844.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|||||||||||||||||||| targets:124   AACUAGAGACGUUAGAUCUAAAAU   147 Target Full Sequence	0.0	Sequence 1508 from Patent EP2559767	NA	coding protein	psRNATarget
HI403274.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|||||||||||||||||||| targets:125   AACUAGAGACGUUAGAUCUAAAAU   148 Target Full Sequence	0.0	Sequence 1399 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235404.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|||||||||||||||||||| targets:125   AACUAGAGACGUUAGAUCUAAAAU   148 Target Full Sequence	0.0	Sequence 1399 from Patent EP2985353	NA	coding protein	psRNATarget
JB163735.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|||||||||||||||||||| targets:125   AACUAGAGACGUUAGAUCUAAAAU   148 Target Full Sequence	0.0	Sequence 1399 from Patent EP2559767	NA	coding protein	psRNATarget
JB163879.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   ||=||||||||||||||||||||| targets:136   AAUCAGAGACGUUAGAUCUAAAAU   159 Target Full Sequence	0.0	Sequence 1543 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235548.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   ||=||||||||||||||||||||| targets:136   AAUCAGAGACGUUAGAUCUAAAAU   159 Target Full Sequence	0.0	Sequence 1543 from Patent EP2985353	NA	coding protein	psRNATarget
HI403418.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   ||=||||||||||||||||||||| targets:136   AAUCAGAGACGUUAGAUCUAAAAU   159 Target Full Sequence	0.0	Sequence 1543 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008646350.2	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|||||||||||||||||||| targets:1719   AACUAGAGACGUUAGAUCUAAAAU   1742 Target Full Sequence	0.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC103625944), mRNA	NA	coding protein	psRNATarget
XM_020552764.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|||||||||||||||||||| targets:3070   AACUAGAGACGUUAGAUCUAAAAU   3093 Target Full Sequence	0.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681116.2	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|||||||||||||||||||| targets:3248   AACUAGAGACGUUAGAUCUAAAAU   3271 Target Full Sequence	0.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163685.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   ||==|||||||||||||||||||| targets:124   AAUUAGAGACGUUAGAUCUAAAAU   147 Target Full Sequence	0.0	Sequence 1349 from Patent EP2559767	NA	coding protein	psRNATarget
HI403224.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   ||==|||||||||||||||||||| targets:124   AAUUAGAGACGUUAGAUCUAAAAU   147 Target Full Sequence	0.0	Sequence 1349 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235354.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   ||==|||||||||||||||||||| targets:124   AAUUAGAGACGUUAGAUCUAAAAU   147 Target Full Sequence	0.0	Sequence 1349 from Patent EP2985353	NA	coding protein	psRNATarget
HI403197.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   ||=||||||||*|||||||||||| targets:124   AAUCAGAGACGAUAGAUCUAAAAU   147 Target Full Sequence	1.5	Sequence 1322 from Patent EP2074227	NA	coding protein	psRNATarget
JB163658.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   ||=||||||||*|||||||||||| targets:124   AAUCAGAGACGAUAGAUCUAAAAU   147 Target Full Sequence	1.5	Sequence 1322 from Patent EP2559767	NA	coding protein	psRNATarget
HI403366.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|*|||||||||||||||||| targets:124   AACUAUAGACGUUAGAUCUAAAAU   147 Target Full Sequence	1.0	Sequence 1491 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235360.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|*|||||||||||||||||| targets:124   AACUAUAGACGUUAGAUCUAAAAU   147 Target Full Sequence	1.0	Sequence 1355 from Patent EP2985353	NA	coding protein	psRNATarget
HI403230.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|*|||||||||||||||||| targets:124   AACUAUAGACGUUAGAUCUAAAAU   147 Target Full Sequence	1.0	Sequence 1355 from Patent EP2074227	NA	coding protein	psRNATarget
JB163827.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|*|||||||||||||||||| targets:124   AACUAUAGACGUUAGAUCUAAAAU   147 Target Full Sequence	1.0	Sequence 1491 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235496.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|*|||||||||||||||||| targets:124   AACUAUAGACGUUAGAUCUAAAAU   147 Target Full Sequence	1.0	Sequence 1491 from Patent EP2985353	NA	coding protein	psRNATarget
JB163691.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|*|||||||||||||||||| targets:124   AACUAUAGACGUUAGAUCUAAAAU   147 Target Full Sequence	1.0	Sequence 1355 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235327.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   ||=||||||||*|||||||||||| targets:124   AAUCAGAGACGAUAGAUCUAAAAU   147 Target Full Sequence	1.5	Sequence 1322 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241673.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|*|||||||||||||||||| targets:136   AACUAAAGACGUUAGAUCUAAAAU   159 Target Full Sequence	1.0	Sequence 7668 from Patent EP2985353	NA	coding protein	psRNATarget
HI409543.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|*|||||||||||||||||| targets:136   AACUAAAGACGUUAGAUCUAAAAU   159 Target Full Sequence	1.0	Sequence 7668 from Patent EP2074227	NA	coding protein	psRNATarget
JB170004.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|*|||||||||||||||||| targets:136   AACUAAAGACGUUAGAUCUAAAAU   159 Target Full Sequence	1.0	Sequence 7668 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238172.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=||||||||||*||||||||| targets:142   AACUAGAGACGUUAAAUCUAAAAU   165 Target Full Sequence	1.5	Sequence 4167 from Patent EP2985353	NA	coding protein	psRNATarget
JB166503.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=||||||||||*||||||||| targets:142   AACUAGAGACGUUAAAUCUAAAAU   165 Target Full Sequence	1.5	Sequence 4167 from Patent EP2559767	NA	coding protein	psRNATarget
HI406042.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=||||||||||*||||||||| targets:142   AACUAGAGACGUUAAAUCUAAAAU   165 Target Full Sequence	1.5	Sequence 4167 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235128.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=||||||||||*||||||||| targets:176   AACUAGAGACGUUAAAUCUAAAAU   199 Target Full Sequence	1.5	Sequence 1123 from Patent EP2985353	NA	coding protein	psRNATarget
JB163459.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=||||||||||*||||||||| targets:176   AACUAGAGACGUUAAAUCUAAAAU   199 Target Full Sequence	1.5	Sequence 1123 from Patent EP2559767	NA	coding protein	psRNATarget
HI402998.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=||||||||||*||||||||| targets:176   AACUAGAGACGUUAAAUCUAAAAU   199 Target Full Sequence	1.5	Sequence 1123 from Patent EP2074227	NA	coding protein	psRNATarget
BT037068.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|||*|||||||||||||||| targets:1021   AACUAGAAACGUUAGAUCUAAAAU   1044 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT087938.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|||*|||||||||||||||| targets:986   AACUAGAAACGUUAGAUCUAAAAU   1009 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds	NA	coding protein	psRNATarget
BT018927.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|||*|||||||||||||||| targets:1166   AACUAGAAACGUUAGAUCUAAAAU   1189 Target Full Sequence	1.0	Zea mays clone Contig55.F mRNA sequence	NA	coding protein	psRNATarget
XM_008679083.2	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|||*|||||||||||||||| targets:2134   AACUAGAAACGUUAGAUCUAAAAU   2157 Target Full Sequence	1.0	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679080.2	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=|||*|||||||||||||||| targets:2143   AACUAGAAACGUUAGAUCUAAAAU   2166 Target Full Sequence	1.0	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163845.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   ||*=|||||||||||||=|||||| targets:124   AAAUAGAGACGUUAGAUUUAAAAU   147 Target Full Sequence	1.5	Sequence 1509 from Patent EP2559767	NA	coding protein	psRNATarget
HI403384.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   ||*=|||||||||||||=|||||| targets:124   AAAUAGAGACGUUAGAUUUAAAAU   147 Target Full Sequence	1.5	Sequence 1509 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235514.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   ||*=|||||||||||||=|||||| targets:124   AAAUAGAGACGUUAGAUUUAAAAU   147 Target Full Sequence	1.5	Sequence 1509 from Patent EP2985353	NA	coding protein	psRNATarget
BT087210.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=||||||*||||||=|||||| targets:450   AACUAGAGACAUUAGAUUUAAAAU   473 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061436.2	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||=||||||*|||*||||||||| targets:284   AACUAGAGACAUUAUAUCUAAAAU   307 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0145O04 mRNA, complete cds	NA	coding protein	psRNATarget
HI403282.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||*|||*||||||*||||||||| targets:128   AACAAGAAACGUUAUAUCUAAAAU   151 Target Full Sequence	2.5	Sequence 1407 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235412.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||*|||*||||||*||||||||| targets:128   AACAAGAAACGUUAUAUCUAAAAU   151 Target Full Sequence	2.5	Sequence 1407 from Patent EP2985353	NA	coding protein	psRNATarget
JB163743.1	ncRNA:24   UUGGUCUCUGCAAUCUAGAUUUUA   1   |||*|||*||||||*||||||||| targets:128   AACAAGAAACGUUAUAUCUAAAAU   151 Target Full Sequence	2.5	Sequence 1407 from Patent EP2559767	NA	coding protein	psRNATarget
HI403205.1	ncRNA:20   UCUCUGCAAUCUAGAUUUUA   1   |*|||||||||||||||||| targets:1   AAAGACGUUAGAUCUAAAAU   20 Target Full Sequence	1.0	Sequence 1330 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235335.1	ncRNA:20   UCUCUGCAAUCUAGAUUUUA   1   |*|||||||||||||||||| targets:1   AAAGACGUUAGAUCUAAAAU   20 Target Full Sequence	1.0	Sequence 1330 from Patent EP2985353	NA	coding protein	psRNATarget
JB163666.1	ncRNA:20   UCUCUGCAAUCUAGAUUUUA   1   |*|||||||||||||||||| targets:1   AAAGACGUUAGAUCUAAAAU   20 Target Full Sequence	1.0	Sequence 1330 from Patent EP2559767	NA	coding protein	psRNATarget